PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G124800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 104aa MW: 11726.5 Da PI: 8.2368 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.5 | 9.8e-13 | 4 | 99 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f k+l +v ++ l +p + +++ +++ + +++ + d +g++W++ + + + ++ v+++GW eF+ +L +g +++F+ + ++ Manes.10G124800.1.p 4 FSKIL--TSVDIHRGLEIPHDRCDDVlveLLITGQRMKILVADVEGNTWNFVCFTKSGNKQPVFKNGWLEFAGHRNLAAGTTITFYKEiDQa 93 55666..445555569*******9999997778899*****************65666666************************9332333 PP SEE..E CS B3 88 sefelv 93 ++++++ Manes.10G124800.1.p 94 TGAQYK 99 555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-11 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.28E-11 | 3 | 103 | No hit | No description |
SuperFamily | SSF101936 | 1.24E-11 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.9E-10 | 4 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MEIFSKILTS VDIHRGLEIP HDRCDDVLVE LLITGQRMKI LVADVEGNTW NFVCFTKSGN 60 KQPVFKNGWL EFAGHRNLAA GTTITFYKEI DQATGAQYKI RVR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G124800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625663.1 | 2e-62 | uncharacterized protein LOC110624707 | ||||
TrEMBL | A0A2C9V6X1 | 1e-71 | A0A2C9V6X1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028150m | 2e-72 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 3e-08 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G124800.1.p |