PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G119500.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 514aa    MW: 57285.1 Da    PI: 6.3238
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G119500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16111160155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW+++I+d+      k+++lg ++t+  Aa+a+++a+ k++g
  Manes.10G119500.3.p 111 SLYRGVTFYRRTGRWESHIWDV-----GKQIYLGGYDTPHAAARAYDRAAIKFRG 160
                          57*******************7.....6************************997 PP
2AP239.41.5e-12203253155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+ +lg f+++ eAa+a+++a+ k +g
  Manes.10G119500.3.p 203 SKYRGVTLHK-CGRWEARMGQF--L-GKKYLYLGLFDSEVEAARAYDRAAIKCNG 253
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-15111170IPR016177DNA-binding domain
PfamPF008471.9E-9112160IPR001471AP2/ERF domain
SMARTSM003802.7E-31112174IPR001471AP2/ERF domain
PROSITE profilePS5103217.504112168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-16112169IPR001471AP2/ERF domain
CDDcd000181.52E-12113170No hitNo description
PfamPF008471.5E-8203253IPR001471AP2/ERF domain
CDDcd000183.41E-26203263No hitNo description
SuperFamilySSF541719.15E-17203263IPR016177DNA-binding domain
SMARTSM003801.4E-32204267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15204261IPR001471AP2/ERF domain
PROSITE profilePS5103215.435204261IPR001471AP2/ERF domain
PRINTSPR003676.0E-6205216IPR001471AP2/ERF domain
PRINTSPR003676.0E-6243263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSDINLNAES VESTLNSDSL IINPSRDAAN GNNKGVDDIV EVGGDGNGIE NENDTAVTTE  60
HFPGSNGRGV SRDSQGKSPQ ENLSFEIEQT ISGGEVQGNI RRRRGLRSRS SLYRGVTFYR  120
RTGRWESHIW DVGKQIYLGG YDTPHAAARA YDRAAIKFRG VDADINFNVS DYEEDMKQMK  180
NLTKEELVHV LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYLY LGLFDSEVEA  240
ARAYDRAAIK CNGREAVTNF DPSNYEGEMF EANNQVDLDL NLSPPLGNGH RGSEEHIQLH  300
SASYVQNRGS GDQSEDNNEI QSRLSSPAPH SPETDQFSCM DVEHGNGSCR ACCRAESLKR  360
KVFEWMFAIA NFIVELLSIV FEQLSSQHYS LFLPICMGMS LLALFICTFE LVYKAQKERA  420
TWQWCGAIPW FYYPSQSGIR LGSFIDIAGL ACAFGQCILT IIGYCLFLRN GSNPIKISIW  480
ASVFASCQLC SKFCGEFKHD VHGQVLNQVQ TSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G119500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625332.10.0floral homeotic protein APETALA 2-like isoform X1
RefseqXP_021625333.10.0floral homeotic protein APETALA 2-like isoform X1
TrEMBLA0A251K0N10.0A0A251K0N1_MANES; Uncharacterized protein
STRINGcassava4.1_028660m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-88related to AP2.7