PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G119500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | AP2 | ||||||||
Protein Properties | Length: 514aa MW: 57285.1 Da PI: 6.3238 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 111 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d+ k+++lg ++t+ Aa+a+++a+ k++g Manes.10G119500.2.p 111 SLYRGVTFYRRTGRWESHIWDV-----GKQIYLGGYDTPHAAARAYDRAAIKFRG 160 57*******************7.....6************************997 PP | |||||||
2 | AP2 | 39.4 | 1.5e-12 | 203 | 253 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+ +lg f+++ eAa+a+++a+ k +g Manes.10G119500.2.p 203 SKYRGVTLHK-CGRWEARMGQF--L-GKKYLYLGLFDSEVEAARAYDRAAIKCNG 253 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-15 | 111 | 170 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-9 | 112 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-31 | 112 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 112 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-16 | 112 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-12 | 113 | 170 | No hit | No description |
Pfam | PF00847 | 1.5E-8 | 203 | 253 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.41E-26 | 203 | 263 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-17 | 203 | 263 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-32 | 204 | 267 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-15 | 204 | 261 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.435 | 204 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 205 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 243 | 263 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MSDINLNAES VESTLNSDSL IINPSRDAAN GNNKGVDDIV EVGGDGNGIE NENDTAVTTE 60 HFPGSNGRGV SRDSQGKSPQ ENLSFEIEQT ISGGEVQGNI RRRRGLRSRS SLYRGVTFYR 120 RTGRWESHIW DVGKQIYLGG YDTPHAAARA YDRAAIKFRG VDADINFNVS DYEEDMKQMK 180 NLTKEELVHV LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYLY LGLFDSEVEA 240 ARAYDRAAIK CNGREAVTNF DPSNYEGEMF EANNQVDLDL NLSPPLGNGH RGSEEHIQLH 300 SASYVQNRGS GDQSEDNNEI QSRLSSPAPH SPETDQFSCM DVEHGNGSCR ACCRAESLKR 360 KVFEWMFAIA NFIVELLSIV FEQLSSQHYS LFLPICMGMS LLALFICTFE LVYKAQKERA 420 TWQWCGAIPW FYYPSQSGIR LGSFIDIAGL ACAFGQCILT IIGYCLFLRN GSNPIKISIW 480 ASVFASCQLC SKFCGEFKHD VHGQVLNQVQ TSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G119500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625332.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Refseq | XP_021625333.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
TrEMBL | A0A251K0N1 | 0.0 | A0A251K0N1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028660m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-88 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G119500.2.p |