PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G111800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 561aa    MW: 66176.7 Da    PI: 8.5007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G111800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08104131126
                          --S---SGGGGTS..--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                          +k ++C +++++   tC++G  C+F+H+
  Manes.10G111800.1.p 104 WKVAICGDYMKSRfkTCSHGTACNFIHC 131
                          899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003614.7E-112197IPR003954RNA recognition motif domain, eukaryote
Gene3DG3DSA:3.30.70.3301.5E-212499IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.26925101IPR000504RNA recognition motif domain
PRINTSPR018484.6E-213045IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.63E-1632102IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018484.6E-215880IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.6E-2185109IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010311.066103133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0066103132IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6104131IPR000571Zinc finger, CCCH-type
PRINTSPR018484.6E-21123135IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVLALLGNKM RGSRSVKCCL LCLYTDEEVE RSYEEFYEDV HTELLKYGEI VNFKVCKNGS  60
FHLRGNVYVQ YKSLDSAVLA YHSINGRYFA GKQVKCEFVN VTRWKVAICG DYMKSRFKTC  120
SHGTACNFIH CFRNPGGDYE WADWDKPPPR YWVKRMAALY GYSDKSEYEM DKEKLEHRRM  180
SRVPADTDRF RARSRSRGVD HLLPCSGKSS DHEDRVQQGT HWHRHRDDDR KRDRTLDEKS  240
CEKGYYSSDH RSHDSNSDGS WSDRDFKLDR KQNKHRSYVR KRSKDQHEVS ECSSDWAGGK  300
SKQSIDEADS DRSRKRKKAH HAHNKSSKIL EKEALLDDNR DMKNESHATD GYRSDRDRDR  360
EKCNRARSSR HQSKARSTDY HGDVTIGTGS MEELSHRDKN KGRLDHPIRK SSRHKSNFSD  420
FTDDHWDDRH RTYDSDSNDE WLDKEIHHSH KRRRSKKIEL EISDDGWVIA EKLKEKSYCE  480
ETETGKSHLK RKTLDRPLSR SSHSGRESNE TNSHEEEFNY VDPYNERYMF DHDPRYKPIE  540
EINGQDRWKP ESPDRDGNSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A5e-142413064167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223233RHRDDDRKRDR
2313317RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G111800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625816.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A2C9V6U40.0A0A2C9V6U4_MANES; Uncharacterized protein
STRINGcassava4.1_003837m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-76C3H family protein