PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G110600.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 685aa MW: 78761.9 Da PI: 7.9649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G110600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	66	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+e+A+++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k++ + +w+vt + ++Hn Manes.10G110600.2.p 66 EFYSEFARRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTANENKPQRNRKSSRCGCQAYMRISKTTelgTPEWRVTGFANHHN 155 6************9998877356667999***********999******************9988889******** PP FAR1 87 Hela 90 Hel Manes.10G110600.2.p 156 HELL 159 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-18	66	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-20	282	373	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	560	593	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	563	591	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MRNMMSEEAG QMLVVYDEPS EQRSLSLDDT SSTEESPDET RLSLETSNDA IPYVGQRFAT 60 HDAAYEFYSE FARRCGFSIR RHRTEGKDGV GKGLTRRYFV CHRAGNTPVK TANENKPQRN 120 RKSSRCGCQA YMRISKTTEL GTPEWRVTGF ANHHNHELLE PNQVRFLPAY RTISDMDKSR 180 ILMFAKTGIS VQQMMRLMEL EKCVEPGYLP FTEKDVRNLL QSFRKLDPED ESIDLLRMCR 240 NIREKDPNFK FEYTLDSNNR LENIAWSYPS SIQSYEIFGD AVVFDTTHRL TAFDMPLGIW 300 VGVNNYGMSC FFGCVLLREE NLRSLSWALK AFLGFMSGKA PQTILTDQNM CLKEAIAMEM 360 PTTKHALCIW MIVAKFPSWF NAVLGERYNE WKAEFHRLYN LESVEDFELG WRDMVNSFEL 420 HNNRHITNLY ALRTLWALPY LRSHFFAGMT ATGHSKSINA FIQRFLSAQT RLAHFVEQVA 480 VAIDFKDQAA EQQTMQQNLQ NICLKTGAPM ESHAASVLTP YAFSKLQEQL VLAAHYASFQ 540 MEDGYLVRHH TKLEGGRKVY WVPREGIISC SCHQFEFSGI LCRHALRVLS TGNCFQIPER 600 YLPIRWRKIS ISPAKPLLNS SNDHGERMQL LQNMVSTLIT ESSKSKERMD IATEQVSILL 660 SRIREQPIPG SHGVRDIATI HRNL*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MRNMMSEEAG QMLVVYDEPS EQRSLSLDDT SSTEESPDET RLSLETSNDA IPYVGQRFAT  60
HDAAYEFYSE FARRCGFSIR RHRTEGKDGV GKGLTRRYFV CHRAGNTPVK TANENKPQRN  120
RKSSRCGCQA YMRISKTTEL GTPEWRVTGF ANHHNHELLE PNQVRFLPAY RTISDMDKSR  180
ILMFAKTGIS VQQMMRLMEL EKCVEPGYLP FTEKDVRNLL QSFRKLDPED ESIDLLRMCR  240
NIREKDPNFK FEYTLDSNNR LENIAWSYPS SIQSYEIFGD AVVFDTTHRL TAFDMPLGIW  300
VGVNNYGMSC FFGCVLLREE NLRSLSWALK AFLGFMSGKA PQTILTDQNM CLKEAIAMEM  360
PTTKHALCIW MIVAKFPSWF NAVLGERYNE WKAEFHRLYN LESVEDFELG WRDMVNSFEL  420
HNNRHITNLY ALRTLWALPY LRSHFFAGMT ATGHSKSINA FIQRFLSAQT RLAHFVEQVA  480
VAIDFKDQAA EQQTMQQNLQ NICLKTGAPM ESHAASVLTP YAFSKLQEQL VLAAHYASFQ  540
MEDGYLVRHH TKLEGGRKVY WVPREGIISC SCHQFEFSGI LCRHALRVLS TGNCFQIPER  600
YLPIRWRKIS ISPAKPLLNS SNDHGERMQL LQNMVSTLIT ESSKSKERMD IATEQVSILL  660
SRIREQPIPG SHGVRDIATI HRNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G110600.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625666.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_021625667.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251K136	0.0	A0A251K136_MANES; Uncharacterized protein
STRING	cassava4.1_002947m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Manes.10G110600.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]