PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G046800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 354aa    MW: 38570.4 Da    PI: 7.104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G046800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17256289134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Manes.10G046800.1.p 256 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 289
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-771337IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.503250286IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-16250300IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15254313No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14254287IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.49E-13255302No hitNo description
PROSITE patternPS003440256281IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15256289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIGPANFMDE IDCGSFFDHI DDLLDFPTDD IEACLSGPDC TTTTKNNNAN ANSFPSIWST  60
QSDSIPCSDS VFSNNSASDL SAELSVPYED IVQLEWLSNF VEDSFSGGSL TMNKEESSSA  120
NKNSSHHQFQ TSSPVSVLES SSSCSGEKIA PRSPEIIASC RRGRARSKRP RPATFTPRPT  180
MQLISPSSSV TESQQPFATL KVPSDSENYA ESRLLIKLPR QVPLEHKKKK KIKITVPLGP  240
AEMNENSTPQ AAVRKCMHCE ITKTPQWRAG PMGPKTLCNA CGVRYKSGRL FPEYRPAASP  300
TFVPSLHSNS HKKVLEMRGK GIDKLPIAGN AAMMSNSPEL IPNNSSNLAM DYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167171KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G046800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626300.10.0GATA transcription factor 8-like
TrEMBLA0A2C9V3690.0A0A2C9V369_MANES; GATA transcription factor
STRINGcassava4.1_010727m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-43GATA family protein