PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G033500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 288aa    MW: 33021.9 Da    PI: 9.3474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G033500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-1924113399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          k+   +++ ++g l +p kf++++g+    s  +tl+d++g+sW+v l   k+++ ++l+kGW eF + + Lk g f+vF+++g+s    
  Manes.10G033500.1.p  24 KII-LENTIREGKLGIPTKFVKDYGNC--LSSPVTLTDPTGNSWKVDL--LKNGNDVWLEKGWPEFSENHSLKYGHFLVFEYKGDSHL-- 106
                          444.356677788***********866..5557***************..********************************997766.. PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                          +v +f++
  Manes.10G033500.1.p 107 HVFIFDE 113
                          8888875 PP
2B343.36.7e-142122781790
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          +l ++++ ++      + ++ + +   +sW vkl++  +++   l++GW  F+++n L++gD+++F++++r+  
  Manes.10G033500.1.p 212 SLIRRYM-KC------ESQILMLHVAEKSWPVKLNVYSNRRIASLARGWTAFARENCLEAGDICIFEMIERNVL 278
                          3333333.33......335999999*********555555559************************8876444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2617107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2618113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-2121112No hitNo description
PROSITE profilePS5086315.45321114IPR003340B3 DNA binding domain
SMARTSM010196.3E-1922114IPR003340B3 DNA binding domain
PfamPF023625.1E-1728112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.60.40.11802.0E-4108139IPR013780Glycosyl hydrolase, all-beta
SuperFamilySSF1019361.24E-15193284IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-11196286IPR003340B3 DNA binding domain
CDDcd100171.05E-13196284No hitNo description
Gene3DG3DSA:2.40.330.103.1E-17196284IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-11209277IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251223286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTSLAGKSQD EIFTVRRKPT RFFKIILENT IREGKLGIPT KFVKDYGNCL SSPVTLTDPT  60
GNSWKVDLLK NGNDVWLEKG WPEFSENHSL KYGHFLVFEY KGDSHLHVFI FDESAVEIEY  120
SGKLNFDGNS PLPKKQEDGD QDIIYLHTTR SGNQSKEKQK QVMAAKGRNW QIERPKSAKT  180
CGALQAANNF ISNYPFFKVL LRRTLDVNVP FSLIRRYMKC ESQILMLHVA EKSWPVKLNV  240
YSNRRIASLA RGWTAFAREN CLEAGDICIF EMIERNVLNV FMFRCAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G033500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625544.10.0B3 domain-containing protein Os01g0723500-like
RefseqXP_021625545.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2C9V3100.0A0A2C9V310_MANES; Uncharacterized protein
STRINGcassava4.1_013238m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-25B3 family protein