PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G018000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 281aa    MW: 32145 Da    PI: 7.7745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G018000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-072166346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT eE +++ +a + +  +   +W ++a++++ g+t  +++  + +
  Manes.10G018000.1.p 21 EWTREENKKFERALAIYDEHepdRWIKVAAMIP-GKTVFDVIKQYKD 66
                         7*****************99*************.****999988876 PP
2Myb_DNA-binding39.61.2e-12121165347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Manes.10G018000.1.p 121 PWTEDEHRRFLLGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKY 165
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0011771IPR017884SANT domain
SMARTSM007173.4E-61870IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-112074IPR009057Homeodomain-like
PfamPF002493.8E-62167IPR001005SANT/Myb domain
CDDcd001672.23E-62167No hitNo description
PROSITE profilePS5129419.44114170IPR017930Myb domain
SuperFamilySSF466891.44E-15116170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-17117169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-9118164IPR009057Homeodomain-like
SMARTSM007175.3E-10118168IPR001005SANT/Myb domain
CDDcd001677.17E-8121166No hitNo description
PfamPF002495.3E-10121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
METLYPSLYM SNSNWFTQST EWTREENKKF ERALAIYDEH EPDRWIKVAA MIPGKTVFDV  60
IKQYKDLEED VCDIEAGKVA IPGYLSSAFT LDCFENRHCD AYRKRPLATK NGDHERKKGV  120
PWTEDEHRRF LLGLLKHGKG DWRNISRNFV VSKTPTQVAS HAQKYFIRQQ LSGVKDKRRP  180
SIHDITTVNL TDNSSSDGNK PPSLDQSNAL LSQDQSAMLI DWNQSKHGSF MVFDSTHGNF  240
FVSSPSEIAS TSFKLQEQNL YAGAHINPHN LVFQRHQIHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1522971186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G018000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624802.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2C9V2L70.0A0A2C9V2L7_MANES; Uncharacterized protein
STRINGcassava4.1_013503m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]