PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G181500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27282.1 Da PI: 9.5588 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.9 | 2.3e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+ tf kR++g+lKK +ELS+LC+++++ ii+ss Manes.09G181500.1.p 11 ISNDSARKGTFKKRKKGLLKKVSELSTLCGVDACAIIYSS 50 9*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.185 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.81E-20 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 9.3E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-17 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTRKKVKLAY ISNDSARKGT FKKRKKGLLK KVSELSTLCG VDACAIIYSS YDPQPEIWPS 60 PSGAQRVLTK FKNMPEMEQS KKMVNQDSFL RQRISKANEQ LKKQQRDNRK KEMTQVMFQA 120 LVGNSLNNLN MLDLNDLEWL INQNLNEVQN KIDSLKKEAN SSASVAVAGP SGEVKDIAPQ 180 QEAEKQASEM NMEAMQKQPW ITDWINQQQE NMGFLGDDVN VPFWDNNNYN GLWSGPFFP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYISNDSARKGTFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G181500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622504.1 | 1e-176 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-65 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2C9VDM9 | 1e-175 | A0A2C9VDM9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_020905m | 1e-176 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-50 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G181500.1.p |
Publications ? help Back to Top | |||
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