PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G136200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WOX | ||||||||
Protein Properties | Length: 260aa MW: 28132.3 Da PI: 6.1602 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.6 | 1.4e-15 | 24 | 84 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ Manes.09G136200.1.p 24 RPRWNPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVVDANVFYWFQNRRSRSRR 84 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 105.1 | 4.4e-34 | 24 | 86 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G + d+NVfyWFQNr++R+r+++ Manes.09G136200.1.p 24 RPRWNPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVVDANVFYWFQNRRSRSRRRH 86 79**********************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.11 | 20 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-13 | 20 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-7 | 22 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-13 | 24 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-8 | 24 | 92 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEHNQGQDAN SRGNHGTERI EPMRPRWNPK PEQILILESI FNSGMVNPPK DETVRIRKLL 60 EKFGSVVDAN VFYWFQNRRS RSRRRHRQMQ ASLAEEKRNK RAQASGGAIH YEGGSGAGGS 120 SSSTSLMGFA NSPSLTVSPS YLLGSSSSVG VGGHEDGAVE SLFLPNEMGF QELDQGSDIS 180 SILCPSGSSN LQYQTGFITV FINGVETEVP GGPIDMKALF GQDAVLIHSS GVAVPCNEFG 240 FLMESLQHGE SYFLVSSQT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G136200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624501.1 | 0.0 | WUSCHEL-related homeobox 11-like isoform X2 | ||||
Swissprot | Q6X7J3 | 6e-69 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2C9VAJ8 | 0.0 | A0A2C9VAJ8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031567m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 2e-33 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G136200.1.p |
Publications ? help Back to Top | |||
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