PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G112700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 438aa    MW: 48299.9 Da    PI: 5.7765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G112700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33256313260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Manes.09G112700.2.p 256 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 313
                          8****************************************.***************85 PP
2WRKY352.8e-11416437122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ldDgy+WrKYGqK+vkg+++pr
  Manes.09G112700.2.p 416 LDDGYRWRKYGQKVVKGNPNPR 437
                          59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28249314IPR003657WRKY domain
SuperFamilySSF1182907.59E-26249314IPR003657WRKY domain
SMARTSM007741.3E-36255313IPR003657WRKY domain
PfamPF031068.4E-26256312IPR003657WRKY domain
PROSITE profilePS5081123.824256314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-13401437IPR003657WRKY domain
SuperFamilySSF1182903.01E-9408437IPR003657WRKY domain
PROSITE profilePS5081116.386411437IPR003657WRKY domain
PfamPF031069.1E-7417437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASSSSSSSS SSGLNTYINS QPTFSFSTHL LMSSSSSSSF TNLLSTNIKD MDSISWGLYD  60
HGTDAIGIEI PKFKSFTPSS LPLSPPPVSP STYLAIPPDL SPAELLDSPV LFSTSNVFPS  120
PITGAFAGQS FNWRNNFSEN QRGVKGEERS FSDFSFQTQT APTSSSFFQS SSSFIPVEQS  180
MKKQQESWNF NKPTKQTDFS SDKGGVVKSE CKPMQYFSSE MAPIQSTIQN NTASQLSYNH  240
YNNQPAPYMR EQRKSDDGYN WRKYGQKQVK GSENPRSYYK CTYPNCPTKK KVERSLDGQI  300
TEIVYKGSHN HPKPQSTRSS SQSMQPSAGV GLEISDQSVA PLESVNMQED SSISMGDDEF  360
EQSSPISNSG GDDDENEPEA KRYKGQNENE GILGAGSRTV REPRIVVQTT SDIDILDDGY  420
RWRKYGQKVV KGNPNPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-162563141574WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G112700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276020.0KT827602.1 Manihot esculenta WRKY transcription factor 27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623467.10.0probable WRKY transcription factor 33
SwissprotQ6B6R41e-100WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2C9V9S90.0A0A2C9V9S9_MANES; Uncharacterized protein
STRINGPOPTR_0016s13600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.15e-75WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]