PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G105800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 247aa MW: 28575.9 Da PI: 8.2177

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G105800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+++gLt++hvkSHLQkYR+ Manes.09G105800.1.p 11 KERLRWTQELHDRFERAVNQLGGPDRATPKGILKAMSIPGLTIYHVKSHLQKYRI 65 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.181	8	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-29	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.14E-18	10	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-9	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	6.1E-18	97	140	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGSSRTDGSG KERLRWTQEL HDRFERAVNQ LGGPDRATPK GILKAMSIPG LTIYHVKSHL 60 QKYRISKFIP ESNNKGKFER RNISELLPNF SATSGAQLNE ALKMQMEVQR RLSDQLEVQK 120 SLKNKIEAQG RFLERIVQEH RNRTVNIQKH KQSFSPTSLP FLCEYSESNA KDFESDDEGD 180 RSDQIHYNED DEFQPLKRFR TENDVLPSRY KLEELNSDPY NNQTSELNLY PWSNMSCSSP 240 LVPSFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G105800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624319.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	3e-52	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2C9VAU8	0.0	A0A2C9VAU8_MANES; Uncharacterized protein
STRING	cassava4.1_033004m	1e-180	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.09G105800.1.p