PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G095300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 32508.3 Da PI: 7.7439 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Manes.09G095300.1.p 48 YSCSFCRREFRSAQALGGHMNVH 70 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.92E-6 | 45 | 74 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MLTKRKHSLS SHLQPSTRPS FDDSWEEKAF AEDAGGPLGG CIWPPRSYSC SFCRREFRSA 60 QALGGHMNVH RRDRARLKQF PDPPNDVPHH EHQNLFQNHY SSLGFQYPSQ ICTLVYNSNP 120 NTDPGFVASQ SSPTQVTCDE KNFFPPLSSS ILKEKHDKKC PRSSPPSSPN FPEDRCYSLS 180 DPWKEVEKNS RIQESGCRAK VDYVKTDHSV SLNLVVRRTC PTTSSDGDEE EATVGKRRRT 240 TAPLLPFLVD RHHAQSEVIE ISTCSIEELD LELRLGDRPK IIMRSLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 43 | 70 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 43 | 70 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G095300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624491.1 | 0.0 | zinc finger protein 10-like | ||||
TrEMBL | A0A2C9V9I2 | 0.0 | A0A2C9V9I2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021905m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-28 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G095300.1.p |