PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G080100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 459aa    MW: 51438 Da    PI: 6.6593
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G080100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-17126175155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.09G080100.1.p 126 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 175
                          78*******************......55************************997 PP
2AP242.22e-13218268155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Manes.09G080100.1.p 218 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 268
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-16126185IPR016177DNA-binding domain
PfamPF008473.0E-9126175IPR001471AP2/ERF domain
CDDcd000181.74E-11127185No hitNo description
PROSITE profilePS5103217.754127183IPR001471AP2/ERF domain
SMARTSM003804.1E-32127189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-17127184IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16218277IPR016177DNA-binding domain
PfamPF008474.9E-9218268IPR001471AP2/ERF domain
CDDcd000181.03E-25218278No hitNo description
SMARTSM003801.5E-31219282IPR001471AP2/ERF domain
PROSITE profilePS5103215.514219276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15219276IPR001471AP2/ERF domain
PRINTSPR003674.7E-6220231IPR001471AP2/ERF domain
PRINTSPR003674.7E-6258278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLDLNLSVSS LHNHHHDLLE LSSTHIDAST SFNSSSNTAA DHYSCSNAQP FSYAFSILNH  60
DHVKSLHDDD DHVEDPTIQL FPPLDGHSSA SITPQLLDLD CREMVPQVQQ RPHVKKSRRG  120
PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGIDADI  180
NFNVSDYEED IKQMSNFTKE EFVHILRRQS TGFSRGTSKY RGVTLHKCGR WEARMGQFLG  240
KKYIYLGLFD SEIEAARAYD KAAIKCNGRE AVTNFEPSTY EGEVIVDANN GDGNQSLDLN  300
LGIAPPDISD GQKLNRDADG FHFRSSWCDR SIDGRPMILN SASAKWKDEQ PHDPAMASHP  360
PPIWGGLDSN FFPLYKERAM EKWVEVDSVP NWMWQNQLAN PPSLFSAAAS SGFVSSTITA  420
PTATAGQLHF PNSTFLYHQI SPSVTNPSNI SHFYNCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G080100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538231.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ8H4431e-104AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2C9VA400.0A0A2C9VA40_MANES; Uncharacterized protein
STRINGcassava4.1_025425m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-97related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]