PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G051000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 404aa MW: 43569.2 Da PI: 7.7246

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G051000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	27.5	1e-08	37	83	19	65
TCP 19 dRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 +R+R++ c + L +eLG+ +d+ ti+WL+ +a p+ t+ Manes.09G051000.1.p 37 NKRIRIPPICVPAIVHLKRELGLRTDGDTIQWLIHEARPQLVPPTKP 83 68************************************998766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-6	37	82	IPR005333	Transcription factor, TCP
SuperFamily	SSF56317	2.09E-64	125	399	IPR003010	Carbon-nitrogen hydrolase
Gene3D	G3DSA:3.60.110.10	9.6E-67	125	397	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	1.97E-105	127	398	No hit	No description
PROSITE profile	PS50263	39.439	127	403	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	5.2E-52	128	389	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	159	174	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MEIIQVHPSP EADPTQQPPV KPTHRRRLTG DGPIAANKRI RIPPICVPAI VHLKRELGLR 60 TDGDTIQWLI HEARPQLVPP TKPPHSRPTP KALNLPKPLC MEYHSEHKLV SYIPVATAGA 120 TAVSKPVRAT VVQASTVLFD TPATMDKAER LIAGAAAYGS QMVVFPEAFL GGYPSYMATD 180 VDLQKYYASA IDVPGPEVDR LAKIAGKYKV HIVMGVVERD GVYLFSTILF FGSMGQHLGH 240 LRKLMPMASE SAVWCSGEKS SLPVYETTIG KVGGLVCWDN KSPLLRTELY AKGVEIYCAP 300 SADAREIWKA SMMHIALEGG CFVLSANQCC RGRDCPVPPG NSDSDTSFDE ITSPGGSFIV 360 SPSGSILAGP NYQGECLISA DLDLAEIARG KTEFSRVGNN LKP*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MEIIQVHPSP EADPTQQPPV KPTHRRRLTG DGPIAANKRI RIPPICVPAI VHLKRELGLR  60
TDGDTIQWLI HEARPQLVPP TKPPHSRPTP KALNLPKPLC MEYHSEHKLV SYIPVATAGA  120
TAVSKPVRAT VVQASTVLFD TPATMDKAER LIAGAAAYGS QMVVFPEAFL GGYPSYMATD  180
VDLQKYYASA IDVPGPEVDR LAKIAGKYKV HIVMGVVERD GVYLFSTILF FGSMGQHLGH  240
LRKLMPMASE SAVWCSGEKS SLPVYETTIG KVGGLVCWDN KSPLLRTELY AKGVEIYCAP  300
SADAREIWKA SMMHIALEGG CFVLSANQCC RGRDCPVPPG NSDSDTSFDE ITSPGGSFIV  360
SPSGSILAGP NYQGECLISA DLDLAEIARG KTEFSRVGNN LKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	4e-40	124	403	13	301	Nitrilase
3wuy_B	4e-40	124	403	13	301	Nitrilase
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the cyanide detoxification pathway. Has nitrilase and nitrile-hydratase activity in the ratio 4.0:1, producing both asparagine and aspartic acid from beta-cyano-L-alanine (Ala(CN)). Can also use 3-phenylpropionitrile as substrate, but not indole-3-acetonitrile. {ECO:0000269\|PubMed:16786295}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G051000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624144.1	0.0	bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X1
Swissprot	Q5QGZ8	1e-126	NRL4A_LUPAN; Bifunctional nitrilase/nitrile hydratase NIT4A
TrEMBL	A0A2C9V804	0.0	A0A2C9V804_MANES; Uncharacterized protein
STRING	cassava4.1_008964m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4583	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-10	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Link Out ? help Back to Top
Phytozome	Manes.09G051000.1.p

Publications ? help Back to Top
Piotrowski M,Volmer JJ Cyanide metabolism in higher plants: cyanoalanine hydratase is a NIT4 homolog. Plant Mol. Biol., 2006. 61(1-2): p. 111-22 [PMID:16786295] Shearer AG,Altman T,Rhee CD Finding sequences for over 270 orphan enzymes. PLoS ONE, 2014. 9(5): p. e97250 [PMID:24826896]