PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G043800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 414aa    MW: 45073.4 Da    PI: 5.1458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G043800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.9e-121151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i n+  r+ ++ kRr g+lKK +EL +LC++++  ii+s++
  Manes.09G043800.1.p 11 IVNDAARKASLKKRRVGLLKKVSELTTLCGVNAFAIIYSPD 51
                         669999*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.928149IPR002100Transcription factor, MADS-box
CDDcd002662.96E-27285No hitNo description
SuperFamilySSF554558.63E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-5323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTRKKVKLVW IVNDAARKAS LKKRRVGLLK KVSELTTLCG VNAFAIIYSP DEPEPMVWPS  60
PPEVEQLIMR YESIPEVERC KKMTNQESYL KERMAKSQEH CRKNHMKNRE YELVYLMDRL  120
RRDNEMDSFE VTELQAFIWL LEEKMRELRK RSEYFQQVPP LPSYPFPPPP PLPLPMSPHG  180
DVIMEEMGQE GGGGGSGGEL MRFNPQEALM WDQWFIDMMN NNENIAGGGS GTNLPQGLNF  240
PGFPGGGGGF DMGVYPGRFG DSSAGNIVGM GLPQGNMNIG MNPFELGMPP YVNPFGLGLH  300
PPPQNFAGSN STNVFGLGLP PPPPPPENFA GSSSANIFGL GPPPPHPENF AGSSSANVFG  360
LGLPPRPPAP APDSTTGESP TAAGGDLGLP GFLPAGTDTG MPFDPTKPWP HNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIVNDAARKASLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G043800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623025.10.0agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2C9V9H60.0A0A2C9V9H6_MANES; Uncharacterized protein
STRINGcassava4.1_027752m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-31AGAMOUS-like 80