PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G024900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 729aa    MW: 79494 Da    PI: 6.1756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G024900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Manes.09G024900.1.p 306 PCPDFRK-GACRRGDMCEYAHG 326
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.2E-1649167IPR020683Ankyrin repeat-containing domain
CDDcd002042.72E-1486165No hitNo description
Gene3DG3DSA:1.25.40.202.1E-1786167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01187117IPR002110Ankyrin repeat
PfamPF127966.6E-987156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.31687180IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.514122157IPR002110Ankyrin repeat
SMARTSM002488.5E-4122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035649336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MCYGWERLKL SPSPIAHLIS FEESRQTNID MNQLTVETED TFASLLELAA NNDAEGFKRS  60
IERDPLCVDE VGIWYSRQKG SKQMVNQHRT PLMVAATYGA VDVIRMILSL SDADVNRSCG  120
LDKSTALHCA VSGGAVNAVD AVKLLLAAGA DPNLVDANGH RPIDVIAVPP KLQDVKYTLE  180
ELLAADGSAF ERNPRVSGAT SNSNSPPLSP SVENGSSPSS LESPVKSKQN DAPVYSTSEK  240
KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTVD  360
ELRPLYVSTG SAVPSPRSST SSATAMDFGA AMSLLPGSPS SVSIMSPSPF TPPMSPSGTG  420
MSHSSVAWPQ PNVPALHLPG GNLQSSRLRS SFNARDIPAE EYSRMPDFDV QQQQLLNELS  480
SLTQPSLSNN SLSHSGRLKT LTPSNLDDLF SGESSSPRYA DQALSAAVFS PTHKSAVLNQ  540
FQQQSMLSPI NTNFSPINVD HPLLQASFAS GRMSPRNVEP ISPMSPRLSM LAQREKQQQQ  600
LRSLSFREIG SNAAATVGSP VSSWSKWGSS DGKPDWTVSA DELGKLRRSN SFELGNGEEP  660
DLSWVQSLVK ESPTEMKEKL AMPISTSVAA SASSSEDLNM NSQIESVDHV VGAWIEQLHI  720
DQLVAQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G024900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622851.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_021622852.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2C9V7C30.0A0A2C9V7C3_MANES; Uncharacterized protein
STRINGcassava4.1_002464m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]