PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G107300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27513.5 Da    PI: 9.7208
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G107300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.41.6e-171150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+
  Manes.08G107300.1.p 11 ITNDSARKATYKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                         89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.582149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25295IPR002100Transcription factor, MADS-box
CDDcd002667.90E-23285No hitNo description
PRINTSPR004043.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT YKKRKKGLMK KVSELSTLCG IDACAIIYSP YDSQPEVWPS  60
PLGVQRVLAQ FRNMPEMDQS KKMVNQESFL RQRITKANEQ LKKQRKENRE KEMTQVMFQG  120
LIGKSLNSLN MMDLNDLGWL IDQNLKEIHK RVETLNKEAN NSQVVAAAAT YGAGPSVEVK  180
ISPEQAERQA FEVNIDAMQR QQWLMDWINP QEPMGFGGDE VNNLPFGDAN HNALWSSAFF  240
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G107300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619236.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-70AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2C9VH641e-180A0A2C9VH64_MANES; Uncharacterized protein
STRINGcassava4.1_022570m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-65AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]