PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G104100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 443aa    MW: 48205.5 Da    PI: 8.5111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G104100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115278127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C+++ rtG C++G++C+F+H+p
  Manes.08G104100.1.p 52 PGEPDCSYYIRTGLCRFGATCRFNHPP 78
                         5789*********************97 PP
2zf-CCCH39.21.2e-1299123327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Manes.08G104100.1.p  99 QPECQYYLKTGTCKFGATCKFHHPK 123
                          799********************96 PP
3zf-CCCH36.96.1e-12147169527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C +++rtG+Ck+G++CkF+H++
  Manes.08G104100.1.p 147 ECAYYLRTGQCKFGSTCKFHHPQ 169
                          7********************97 PP
4zf-CCCH37.93e-12303329127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G+ C+F+H++
  Manes.08G104100.1.p 303 PGQPECQFYMKTGDCKFGAVCRFHHPR 329
                          5789*********************96 PP
5zf-CCCH391.4e-12349375127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G Ck+G++CkF H++
  Manes.08G104100.1.p 349 PGEPLCIFYSRYGVCKFGPSCKFDHPM 375
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-55178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5875179IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-85378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-55679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45777IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1496124IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-696123IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-1099123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5102122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225142170IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5142169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6145170IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9147169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596302330IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6302329IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5308330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671348376IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6348375IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5351375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4353373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDFDAGITMS RTGPPPVTEG PPLSPSLNED AMWQMNLRAN ESMESGPYPE RPGEPDCSYY  60
IRTGLCRFGA TCRFNHPPNR KLAIAAARMK GEFPERIGQP ECQYYLKTGT CKFGATCKFH  120
HPKDKAGISG RVSLNILGYP LRPNEIECAY YLRTGQCKFG STCKFHHPQP TNVMVPLRGS  180
PVYPTVQSPT TPGQQSYPGG LTNWSRASFI TSPRWQAPSS YTPLILPQGV VSVPGWNAYS  240
GQLGSVSSPE GQQQAGNSQI YGTSRQSESM NTGSQGPLSP FRSGSVPVGF YALQRENVFP  300
ERPGQPECQF YMKTGDCKFG AVCRFHHPRE RLIPAPDCVL SPIGLPLRPG EPLCIFYSRY  360
GVCKFGPSCK FDHPMGIFTY NLSASSSADA PVRRFLGTSS GSAALTLSPE GLVEAGSTKP  420
RRLSLSETRQ MPAGDDNIDT EG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G104100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620512.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A251KCB90.0A0A251KCB9_MANES; Uncharacterized protein
STRINGcassava4.1_007759m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1