PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G096900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 422aa    MW: 47903.3 Da    PI: 6.433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G096900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-1674133155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse....ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr++  +g+WvAeIr+p       +  +  r +lg+f ta eAa+a++ a+k+++g
  Manes.08G096900.1.p  74 CRYRGVRQRV-WGKWVAEIREPAGkfslLNdaRGHRRWLGTFATAIEAAQAYDSAAKAMYG 133
                          78******99.**********8666555225666999*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1174133IPR001471AP2/ERF domain
CDDcd000183.20E-2874142No hitNo description
Gene3DG3DSA:3.30.730.103.4E-2775142IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1775142IPR016177DNA-binding domain
SMARTSM003806.7E-3175147IPR001471AP2/ERF domain
PROSITE profilePS5103222.07675141IPR001471AP2/ERF domain
PRINTSPR003675.7E-117687IPR001471AP2/ERF domain
PRINTSPR003675.7E-11123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTEMGDAAKE SSCSGSSSNS RKKLRRRRGG CESLEDTLDK WKKRNKLGEI RKPPSKGSRK  60
GCMRGKGGPD NQSCRYRGVR QRVWGKWVAE IREPAGKFSL LNDARGHRRW LGTFATAIEA  120
AQAYDSAAKA MYGSNAILNF PDYNSETESR TTSNSRDDNH IEKTKNHSCG VGGFKEQNGK  180
SKEAESISRL KDEGSISRAD YRSSTDLVKA EPMVKGTKEE FARVMESRGH YLQSEMKNVK  240
AELSTDYECS NEIKEELGRS MESNQHDGLN NMHMPIYKDD DLRIDCKPFN DVEKLMMRKV  300
MEGEGSSYCN PLEVRHDNMS IDFRDMNCYQ ELDLKCGINS ALQAERTYDH DHFQLGSANY  360
QQSNLAYQFQ KQNPIADLLD CQNQTEEAKG SVDCSFNLWE PEFNWGSMEE LGLMEPWDFG  420
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1676141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026RKKLRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G096900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619598.10.0uncharacterized protein LOC110620254
TrEMBLA0A2C9VEX50.0A0A2C9VEX5_MANES; Uncharacterized protein
STRINGcassava4.1_008857m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-35ERF family protein