PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G095500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 493aa    MW: 55523.6 Da    PI: 4.6681
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1372e-421264913374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL +  ea+++++  la+ ++  +s+ +s ++ p+ Rla+ + +  +++                 ++++s++  +a+++f++++P+ +
  Manes.08G095500.1.p 126 HLLKAYGEAMENRQSDLADVIMRCVSDKVSLNDGPLLRLAFNLSQDVENHGDY-------------LEKESSKNFDSAFRVFYQIFPYGR 202
                          7888889999******************************9765555554333.............2223356778899*********** PP

                 GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpf 176
                          f+h+taN+ Ilea+  + e++Hi+Dfd+++ +QWp++l+aLa  ++g   +++T+++ ++++     s  + ee ++rL + A+++g+++
  Manes.08G095500.1.p 203 FAHFTANSVILEALPADtETIHIVDFDMGEAVQWPPMLEALARLKKG---VKLTAIKWENENchrapSIWSFEEAKKRLVDHARQFGLKL 289
                          **************98879***********************98888...*******988878888888899****************** PP

                 GRAS 177 efnvlvakrledl..eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvk.....slsPkvvvvveqeadh...nses 252
                          +   +   ++e+l  e+++++  +    +E la n+ +ql ++   ++ ++++ +e+L + k     s +  ++++++ ++     + + 
  Manes.08G095500.1.p 290 KVAEM---EIEELasEIKRMK--KrggrREWLAFNCTVQLPHMG--RMRSRKAVEEFLTVAKesmaiSANRGIITLADGDSWEnlkDCSG 372
                          *9997...4444411244443..33466***************8..5666666899**99983332234556*******96551134558 PP

                 GRAS 253 Flerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                          F   f   + +y al+ds+e+++p +  e+r+ +E  ++++ i++ v  e+ +     e +++ +  +++  ++  ++s + +++a  ++
  Manes.08G095500.1.p 373 FGSFFEGNIAHYQALLDSIESNFPVHLaEARMALECLFVSPFISSKVWLEKWM-----EIKASCNVEIGS-SLEGWRISRESMEEAAEMV 456
                          9999999*****************88779**********************98.....777777888886.59***************** PP

                 GRAS 342 rkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                          +  + + yr+    + +++++l Wk++pLv v+aWr
  Manes.08G095500.1.p 457 KGNQ-NLYRLRtggQWNNEMILEWKGHPLVRVCAWR 491
                          ***9.67***965566*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.38998492IPR005202Transcription factor GRAS
PfamPF035146.9E-40126491IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDIDAYVDAC EFSSKFSTPD DNSSDISSFP CFSTIFPTQF AQSPMTSGDD QSQATLSVDD  60
FLQDPNFCGD MEFVFSENEG SFPSQEVASE GSGWSPSHSV KTNEAPPSLT LPGEESELDK  120
QLSVLHLLKA YGEAMENRQS DLADVIMRCV SDKVSLNDGP LLRLAFNLSQ DVENHGDYLE  180
KESSKNFDSA FRVFYQIFPY GRFAHFTANS VILEALPADT ETIHIVDFDM GEAVQWPPML  240
EALARLKKGV KLTAIKWENE NCHRAPSIWS FEEAKKRLVD HARQFGLKLK VAEMEIEELA  300
SEIKRMKKRG GRREWLAFNC TVQLPHMGRM RSRKAVEEFL TVAKESMAIS ANRGIITLAD  360
GDSWENLKDC SGFGSFFEGN IAHYQALLDS IESNFPVHLA EARMALECLF VSPFISSKVW  420
LEKWMEIKAS CNVEIGSSLE GWRISRESME EAAEMVKGNQ NLYRLRTGGQ WNNEMILEWK  480
GHPLVRVCAW RN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619919.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2C9VH570.0A0A2C9VH57_MANES; Uncharacterized protein
STRINGcassava4.1_006313m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-20GRAS family protein