PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G095400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 505aa    MW: 57924.2 Da    PI: 4.8695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G095400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS137.71.2e-421465049374
                 GRAS   9 AeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                           ea++++++ela+ ++ r+se +sp g+  +R+  y  +  +    +     ++    +++s     + ++a+ +f++++P+  ++h+ta
  Manes.08G095400.1.p 146 GEAMENNQAELAEVIMRRISEKVSPIGEIRERVLYYAFQQFSDNKKQ-----AD--YIKQES---CRNFVTAFMAFYQIFPYGMIAHFTA 225
                          5789999*****************************98877776555.....22..333333...6678888899*************** PP

                 GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                          N+aIlea  ++ + +H++Dfd+++G+QW +L+ +L +      +l++T+++  e++  s ++  et+++L++f  ++g++++ + +   +
  Manes.08G095400.1.p 226 NSAILEAKPEHfQVLHVVDFDMGEGVQWSSLIMSLPQ----HITLKLTAIKWREEDsdSGRKFTETRRQLQDFSGSIGIRLHVEEM---E 308
                          *******98886888********************87....469******99887778999**********************998...4 PP

                 GRAS 186 ledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvksl.......sPkvvvvveqe...adhnsesFlerflea 260
                          ++dl  e ++ k+     +E la n++ +l ++ +++ s +    e+L + k++       +  +v++ +     +  n + F   f  +
  Manes.08G095400.1.p 309 IQDLAKE-MKRKTknggkREWLAFNCMWALPHMGKRRSSRQV--MEFLAVAKDViadsatnNKGIVTLGDGGdwqTMKNCNAFGPFFECC 395
                          4444222.2222223556***************966555555..8999999988333333233588888865543455888999999999 PP

                 GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                          +  y al++s+e +lp    e+r ++E  ++++ ++ v  +++         +e   + ++  GF+ + ++++  ++ak ++r+ +   y
  Manes.08G095400.1.p 396 MGRYEALLESMELNLPVRLaEARLSMECLFISPYVSFVTLMQTWG-----DVKEGSCDFMKGLGFEGLMMNNRSLMEAKEMVRQGETP-Y 479
                          9***************77659999999999998887776666666.....333444789*************************9966.* PP

                 GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                           v  +++++vl Wk+ pLv vS+Wr
  Manes.08G095400.1.p 480 GVRTDNNEIVLEWKGIPLVRVSSWR 504
                          ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.724112485IPR005202Transcription factor GRAS
PfamPF035144.1E-40146504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MLESQLFHVP FLHDSNNEVE LFLDDQYPNY ALGINARVHQ SELSPTFPSN AQFVDDMNLE  60
FLLDELPFAL EESDLFWKEM QDIFEWLKIA DCSGGKNNDE CCNHRPLIVS GCTSMDRLVQ  120
RPLTIPNEGF EISFQVSMNH LAKAYGEAME NNQAELAEVI MRRISEKVSP IGEIRERVLY  180
YAFQQFSDNK KQADYIKQES CRNFVTAFMA FYQIFPYGMI AHFTANSAIL EAKPEHFQVL  240
HVVDFDMGEG VQWSSLIMSL PQHITLKLTA IKWREEDSDS GRKFTETRRQ LQDFSGSIGI  300
RLHVEEMEIQ DLAKEMKRKT KNGGKREWLA FNCMWALPHM GKRRSSRQVM EFLAVAKDVI  360
ADSATNNKGI VTLGDGGDWQ TMKNCNAFGP FFECCMGRYE ALLESMELNL PVRLAEARLS  420
MECLFISPYV SFVTLMQTWG DVKEGSCDFM KGLGFEGLMM NNRSLMEAKE MVRQGETPYG  480
VRTDNNEIVL EWKGIPLVRV SSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1221650488375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G095400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621507.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2C9VEV30.0A0A2C9VEV3_MANES; Uncharacterized protein
STRINGcassava4.1_032025m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-19GRAS family protein