PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G077900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 557aa    MW: 61514 Da    PI: 8.1227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G077900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-1759105148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Manes.08G077900.1.p  59 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                          688*****************************.************986 PP
2Myb_DNA-binding58.41.6e-18111157148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+++ ++v+++G+  W+ I++ ++ gR +kqc++rw+++l
  Manes.08G077900.1.p 111 KGPWTQEEDDKITELVAKYGPTKWSVISKSLP-GRIGKQCRERWHNHL 157
                          79******************************.*************97 PP
3Myb_DNA-binding569.3e-18163206146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Manes.08G077900.1.p 163 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 206
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.81954105IPR017930Myb domain
SMARTSM007171.2E-1458107IPR001005SANT/Myb domain
PfamPF002491.5E-1559105IPR001005SANT/Myb domain
SuperFamilySSF466892.8E-1560115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1961114IPR009057Homeodomain-like
CDDcd001671.20E-1262105No hitNo description
PROSITE profilePS5129431.003106161IPR017930Myb domain
SuperFamilySSF466892.62E-31108204IPR009057Homeodomain-like
SMARTSM007171.5E-17110159IPR001005SANT/Myb domain
PfamPF002491.0E-17111157IPR001005SANT/Myb domain
CDDcd001675.31E-15113157No hitNo description
Gene3DG3DSA:1.10.10.608.9E-27115164IPR009057Homeodomain-like
PROSITE profilePS5129422.781162212IPR017930Myb domain
SMARTSM007171.3E-16162210IPR001005SANT/Myb domain
PfamPF002496.2E-16163206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23165212IPR009057Homeodomain-like
CDDcd001671.81E-12165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSEVKIEECC LENKQLTAAS SSSISEGSGS AILKSPGVSS PATASPTHRR TTGPIRRAKG  60
GWTPEEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KITELVAKYG PTKWSVISKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRI  180
HGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KLDFYLATGE LPPVVKSDIV FPSRKLPSVA  240
KNGIQNGTRD TNKPAVTKTS KESDSTAQTS SGTTDACKLE EDGKDQLESL ALVRDMAASS  300
SVFPNESADS EGVECTHSFV ADLSCCDSEA LPKCENYGIN YETNEEKVFG SQLQFETSTY  360
GSLYYEPPQL ETCTPINLDP SVMHQVQHEY SSSPISSPIS FFTPPCVKSS NLRAQSPESI  420
LRIAAKSYPN TPSIFRKRKT GSQVHLLPSK IGKVGQESIE DRLQRRTEYT PEKAGSQKGN  480
LHDSPHPDDS TSLPNGKAFN ASPPYRLKSK RTAVFKSVER QLEFTFDKER CDTTKSVNGS  540
SLITEDCARA TKMGVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G077900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620984.10.0transcription factor MYB3R-3-like
RefseqXP_021620985.10.0transcription factor MYB3R-3-like
SwissprotQ6R0321e-177MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A251KT180.0A0A251KT18_MANES; Uncharacterized protein
STRINGcassava4.1_004816m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-165myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]