PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G069400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 859aa MW: 98031.9 Da PI: 6.5309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G069400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.8e-24	98	184	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA+++GF +++++s++sk++g++++ + Cs+ g+++e++ + ++r+ +t+Cka +++k+++d+kw ++++ +eHnHe++ Manes.08G069400.1.p 98 SFYREYARSIGFGITIKASRRSKKSGKFIDVKIACSRFGSKRESSAT----VNPRSCIKTDCKAGMHMKRTQDEKWIIYSFIKEHNHEIC 183 5***************************************99888....99*********************************99 PP FAR1 91 p 91 p Manes.08G069400.1.p 184 P 184 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-21	98	184	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-26	266	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.05	544	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-6	553	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-5	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MEINLEMPSH EQKKQNTGSN KNIDVMDNAY GLHVTEEEMY SPTCEYVEEA CGPNENDGCT 60 GGGDHVEGNT LKADAVSKGV TIEPQNGLEF ETKEAAYSFY REYARSIGFG ITIKASRRSK 120 KSGKFIDVKI ACSRFGSKRE SSATVNPRSC IKTDCKAGMH MKRTQDEKWI IYSFIKEHNH 180 EICPDDFYNS IQGRNKQSGV VACQKKGLQL ALDEDDIQVM LEHFMCMQTE NPNFFYSLDL 240 DLDKRLRNVF WIDAKGRHDY NFFCDVVFLD TFYVRNNYKV PYAPIIGVNH HFQYMLLGCA 300 LIGEQTTSTF IWLMQTWRKA VGGQAPKVII TEQDKCLNEA VSDVFPDTRH CFCLWHILSK 360 MPENLPCVAN EGEIFMAKFN KCIYRSWTDE QFEKRWWKMV DKFELKDDEW VNSLFEDRKR 420 WVPTYMQDTF LAGMSTTERY GSIASLFDKY IHKEGTFKEF MEQYKIFLQD LSEMEVTAGF 480 ETQNKQTALR SQSSFEKQVL GVYTDAVFEK FQVEVLGAVS CQLQKESEDG PTCNFRVDDF 540 EERQNFLIAW NEAALDIHCL CRSFEYRGFL CKHAILVLQM SGLSNIPSHY ILKRWTKDAK 600 IAQSASVISK NLPYRVQRFN DLCKQAIKLC EAGSLCEEAY HIAFQALEEV LKSCVGVNNS 660 VRSASAPNTL AVHGFLDIEE ENRSNNMAKS SKKKKIYKKR KVLSEPEGPA VGLQDCYQQL 720 ENINSRAHTT ENCYVPQQDI HDVELGSRAQ ALDGFYGPQH GMQGQLNSIS PIRDGYYSHH 780 QGLPGMGQLH SILTCVSSYG SQQSMQALGQ IGFRTPTVQG CFHIHSNLQD TALQEQPVGS 840 TQYQSTATKQ LHDKRHSH*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MEINLEMPSH EQKKQNTGSN KNIDVMDNAY GLHVTEEEMY SPTCEYVEEA CGPNENDGCT  60
GGGDHVEGNT LKADAVSKGV TIEPQNGLEF ETKEAAYSFY REYARSIGFG ITIKASRRSK  120
KSGKFIDVKI ACSRFGSKRE SSATVNPRSC IKTDCKAGMH MKRTQDEKWI IYSFIKEHNH  180
EICPDDFYNS IQGRNKQSGV VACQKKGLQL ALDEDDIQVM LEHFMCMQTE NPNFFYSLDL  240
DLDKRLRNVF WIDAKGRHDY NFFCDVVFLD TFYVRNNYKV PYAPIIGVNH HFQYMLLGCA  300
LIGEQTTSTF IWLMQTWRKA VGGQAPKVII TEQDKCLNEA VSDVFPDTRH CFCLWHILSK  360
MPENLPCVAN EGEIFMAKFN KCIYRSWTDE QFEKRWWKMV DKFELKDDEW VNSLFEDRKR  420
WVPTYMQDTF LAGMSTTERY GSIASLFDKY IHKEGTFKEF MEQYKIFLQD LSEMEVTAGF  480
ETQNKQTALR SQSSFEKQVL GVYTDAVFEK FQVEVLGAVS CQLQKESEDG PTCNFRVDDF  540
EERQNFLIAW NEAALDIHCL CRSFEYRGFL CKHAILVLQM SGLSNIPSHY ILKRWTKDAK  600
IAQSASVISK NLPYRVQRFN DLCKQAIKLC EAGSLCEEAY HIAFQALEEV LKSCVGVNNS  660
VRSASAPNTL AVHGFLDIEE ENRSNNMAKS SKKKKIYKKR KVLSEPEGPA VGLQDCYQQL  720
ENINSRAHTT ENCYVPQQDI HDVELGSRAQ ALDGFYGPQH GMQGQLNSIS PIRDGYYSHH  780
QGLPGMGQLH SILTCVSSYG SQQSMQALGQ IGFRTPTVQG CFHIHSNLQD TALQEQPVGS  840
TQYQSTATKQ LHDKRHSH*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G069400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620803.1	0.0	protein FAR1-RELATED SEQUENCE 2-like isoform X2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2C9VG04	0.0	A0A2C9VG04_MANES; Uncharacterized protein
STRING	VIT_03s0017g01830.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Manes.08G069400.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]