PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G064800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 322aa    MW: 35885.4 Da    PI: 5.3622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G064800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-191663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l++ ++++G g+W++ ++  g++R++k+c++rw +yl
  Manes.08G064800.1.p 16 KGPWTPEEDKKLIEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 63
                         79********************************************97 PP
2Myb_DNA-binding54.23.3e-1769114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  Manes.08G064800.1.p  69 RGNFSEDEEQIIINLHAVLGNK-WSAIAQNLP-GRTDNEIKNFWNTHL 114
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-251066IPR009057Homeodomain-like
PROSITE profilePS5129418.51163IPR017930Myb domain
SuperFamilySSF466891.01E-3113110IPR009057Homeodomain-like
SMARTSM007173.4E-161565IPR001005SANT/Myb domain
PfamPF002492.9E-181663IPR001005SANT/Myb domain
CDDcd001672.14E-131863No hitNo description
PROSITE profilePS5129426.7564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2767118IPR009057Homeodomain-like
SMARTSM007171.4E-1668116IPR001005SANT/Myb domain
PfamPF002496.5E-1669114IPR001005SANT/Myb domain
CDDcd001677.22E-1371114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMGKSSSFED ENGIKKGPWT PEEDKKLIEF IQKHGHGSWR ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG NFSEDEEQII INLHAVLGNK WSAIAQNLPG RTDNEIKNFW NTHLKKKLLQ  120
MGIDPVTHSP RSDLNLLSDL PQLLAAANFN NLMNNVTWDN GLRQIQLLHN IILQTLSSNP  180
LPNMEAAATN LIGSNAIYEV AGYNSVPPLD IEAPQPPLND QYHPLKDSKP GFNDNGEMGS  240
SSYVVPISNR LLPPFVSFSP DDHHCNQTET CCRINPYDIS NPSSTSTTFE ALGDIMDDEA  300
SCAYCREIID QASSQPWAMS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31161187108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G064800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347271e-67KM034727.1 Jatropha curcas clone JcMYB107 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621702.10.0transcription factor MYB39-like
TrEMBLA0A2C9VDZ10.0A0A2C9VDZ1_MANES; Uncharacterized protein
STRINGcassava4.1_032869m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.11e-87myb domain protein 107