PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G048800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 730aa MW: 79291.9 Da PI: 6.3511 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Manes.08G048800.1.p 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.31E-16 | 40 | 167 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.335 | 87 | 180 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0066 | 87 | 117 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 1.4E-17 | 87 | 167 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.7E-10 | 87 | 156 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.50E-14 | 89 | 165 | No hit | No description |
SMART | SM00248 | 3.9E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.274 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 334 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 49 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MCCGWERLKS TPSPTPPLIS FEESRPTNID MNHLTVETED AFASLLELAA NNDSEGFKRS 60 IECDPLSVDE TGLWYSRQKG FKQMVNQYRT PLMVAATYGS VDVMRLILSL SDADVNRSCG 120 SDKSTALHCA ASGGAPNALD AVKLLLAAGA DPNLVDANGH RPVDVIVVPP KLQGVKLTLK 180 ELLATDGSVI EHNLRVSTDN SNSNSPPLSP SMDNGSPLSA SDSPVRSKLN DTPVFSTSEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTVE 360 ELRPLYVSTG SAVPSPRSST PGATAMDFAA AMNLLPGSPS SVSVMSPSPF TPPMSPSTNG 420 MSHSSAAWPQ PNVPALHLPG SNLQSSRLRS ALNARDLPAE DYSLLPDFDV QQQQLLNELS 480 SLNQPSLSNN SLNRSGRLKI LTPSNLDDLF SAESSSPRYA DQALAAAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTNFSPKNV DHPLLQASFA SGRMSPRNVE PISPMSSRVS MLAQREKQQQ 600 QLRSLSSRDL GSNSAAIAGS SVNSWSKWGS SNGKPDWAVA ADELGKLRRS NSFELGNGEE 660 PDLSWVQSLI KESPTEMKEK LAMPVSSSVA ATASSSEGPS MNPQIESVDH AVGAWIEQLQ 720 IDQLVAQQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G048800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620254.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_021620255.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_021620256.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A251KB14 | 0.0 | A0A251KB14_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002452m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G048800.1.p |
Publications ? help Back to Top | |||
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