PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G035100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39505.1 Da    PI: 6.7475
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G035100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131152344
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         i n+s r+ ++ kRr g+lKK +EL +LC++ + vii+s++ 
  Manes.08G035100.1.p 11 IVNDSARKASLKKRRIGLLKKVSELTTLCGVSAFVIIYSPEE 52
                         6799***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699153IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-19160IPR002100Transcription factor, MADS-box
CDDcd002664.55E-25285No hitNo description
SuperFamilySSF554558.11E-22295IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTRKKVKLMW IVNDSARKAS LKKRRIGLLK KVSELTTLCG VSAFVIIYSP EEKEPMLWPS  60
RQVVQQMLMR YQSIPEIERS KKMMNQESYL KERIAKLQEQ LRKHQKKNRE IELTYFMDRL  120
HHGNGMDDLE VNEVQEFIWL LEEKMKDVRK RVEYFQQAPA LPAGFFPLAS HGGPTIEAMG  180
HQEGGSSGAG DIMRNSPIDG MLWDQWFIDM MNNNENIAGG GTRDDTCHPL GFNINETPGA  240
GGVDLRFVHV HPGNFGGTGD GNMIEQGLPQ GNMNMAVNPY DLGFFPHGNP IGGNPFGMEL  300
KLHDNVTGGV ELPAPPSSTT GGRSDVGLPG FFTSGSDIGL PYDVTKPWPH NLSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLMWIVNDSARKASLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G035100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620554.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A2C9VD470.0A0A2C9VD47_MANES; Uncharacterized protein
STRINGcassava4.1_021594m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-38AGAMOUS-like 80