PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G034200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 294aa    MW: 32358.4 Da    PI: 6.0922
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G034200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.7e-371468761
               zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Manes.08G034200.1.p 14 SCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68
                         7***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-27167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7141367IPR003851Zinc finger, Dof-type
PfamPF027012.2E-311467IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDSGWKTNVE ISPSCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKS LKLSSTDVAH SRNLGYGVTV SNREASSVES CSSSMTSDGS HIDLALVYAN  120
FLNPRPDSKT TTTTTTANTA DFEVQELHTS DFSSFPNTNL ESTSVQLHGE NHNSTTLGGC  180
LTTFCDSSTE TPLTENDHHL MYFHQAEENK VQQCTSTLHE SIHYGLPPLP GEEVGPHHEI  240
LWSNSHLMGN DHTLQVTQDP PILGPETQDP NNLLFGNWNP FDLSSDHDTF SGP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G034200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6648703e-58EU664870.1 Jatropha curcas microsatellite JATR788 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619268.10.0dof zinc finger protein DOF3.5-like
TrEMBLA0A2C9VD940.0A0A2C9VD94_MANES; Uncharacterized protein
STRINGcassava4.1_030236m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-52Dof family protein