PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G027800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 29895.4 Da PI: 5.2135 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141 | 7.1e-44 | 14 | 147 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 l+pGfrF Pt+eelv++yL +k+e+k+ l ++++i+ +diy+++Pw+Lp+ ++ + ++w+fF++r++++a+g r++r t++gy Manes.08G027800.1.p 14 LTPGFRFYPTEEELVSFYLLNKLEAKRpdldLVVDKIIPVLDIYEFNPWQLPQhagdLFSRDPEQWFFFIPRQESEARGGRPKRLTTAGY 103 579***********************977665566689999***********645544444677************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ +v+s +++ +g+k+t+vfy+grap+g+kt+W m+ey+ Manes.08G027800.1.p 104 WKATGSPGNVYS-NNRSIGMKRTMVFYTGRAPNGRKTEWKMNEYK 147 ************.9999***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-47 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.666 | 14 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-23 | 16 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MSFTNLYPTK MEDLTPGFRF YPTEEELVSF YLLNKLEAKR PDLDLVVDKI IPVLDIYEFN 60 PWQLPQHAGD LFSRDPEQWF FFIPRQESEA RGGRPKRLTT AGYWKATGSP GNVYSNNRSI 120 GMKRTMVFYT GRAPNGRKTE WKMNEYKAID AESSSSSSAA ASLTLRHEFS LCRVYKKSKS 180 LRAFDRRPMG VEISEMRAQQ PAAVQVDEAT TSHQNPPMAN SPESSWSNED NPAVPPQTGE 240 SSGSILTPID GDTSWDLDEL NWY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-37 | 8 | 180 | 11 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-37 | 8 | 180 | 11 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-37 | 8 | 180 | 11 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-37 | 8 | 180 | 11 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swm_B | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swm_C | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swm_D | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swp_A | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swp_B | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swp_C | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
3swp_D | 6e-37 | 8 | 180 | 14 | 171 | NAC domain-containing protein 19 |
4dul_A | 6e-37 | 8 | 180 | 11 | 168 | NAC domain-containing protein 19 |
4dul_B | 6e-37 | 8 | 180 | 11 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G027800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605212 | 0.0 | KR605212.1 Manihot esculenta NAC transcription factors 74 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620210.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-72 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2C9VES4 | 0.0 | A0A2C9VES4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029154m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-73 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G027800.1.p |
Publications ? help Back to Top | |||
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