PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G132100.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 340aa    MW: 38087.4 Da    PI: 9.5459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G132100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-13103186186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +Liea  ++  +l+rg+l++++W+ev++ +  r+ g+  +++ +qCk++++ l+k+yk +k+          s++p++ +l+
  Manes.07G132100.3.p 103 CWSEGATETLIEAWGDRYINLNRGNLRQKDWKEVADTVngRQNGVkpRKTDVQCKNRIDTLKKKYKLEKAKPPP------SKWPFYYRLD 186
                          7*************************************998888865679******************999886......5799999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-26101188No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLIIQTLPYK VISRLTPIRE ADVIAGLNAR PSLPLPLSTS PTNPILFSII LHPLSLRRTL  60
APSAIHSPTS HTPLPLFPMD PIRSVHHSTR PSASGGGGGR EDCWSEGATE TLIEAWGDRY  120
INLNRGNLRQ KDWKEVADTV NGRQNGVKPR KTDVQCKNRI DTLKKKYKLE KAKPPPSKWP  180
FYYRLDSLIG ANATVNPKKK AAAATFPVKS TPSIKPELYT GVSNSTEASF DDEKDEDDDD  240
IGFDERAIKK QHRIEDVDFS DGAACRELAR AILKFGEIYE RIESSKQQQM VELEKQRMEF  300
TKELEFERMN MFMDAQLELE KKSSKRSKYA SSGSAGKTL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G132100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618397.10.0trihelix transcription factor ASIL2 isoform X4
SwissprotQ9LJG89e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2C9VML80.0A0A2C9VML8_MANES; Uncharacterized protein
STRINGcassava4.1_013408m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-70sequence-specific DNA binding transcription factors