PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G125100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 289aa    MW: 32996.2 Da    PI: 8.8711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G125100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.3e-092165345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          WTteE + + +a + +  +   +W+++a++++ g+t ++++  + 
  Manes.07G125100.1.p 21 EWTTEENKVFERALAIFDEHepdRWTKVAAMIP-GKTVYDVIKQYK 65
                         5**************99999999**********.*******98886 PP
2Myb_DNA-binding39.51.3e-12121165347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Manes.07G125100.1.p 121 PWTEDEHRRFLLGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKY 165
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.831770IPR017884SANT domain
SMARTSM007171.2E-61870IPR001005SANT/Myb domain
PfamPF002491.7E-62166IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-112174IPR009057Homeodomain-like
CDDcd001673.59E-72167No hitNo description
PROSITE profilePS5129418.579114170IPR017930Myb domain
SuperFamilySSF466891.15E-15115170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17117169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-9118164IPR009057Homeodomain-like
SMARTSM007175.3E-10118168IPR001005SANT/Myb domain
CDDcd001675.59E-8121166No hitNo description
PfamPF002495.6E-10121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
METLYPSLYM SNSNWFSQSA EWTTEENKVF ERALAIFDEH EPDRWTKVAA MIPGKTVYDV  60
IKQYKELEDD VSDIEAGKVP IPGYPSSPIT LNWVEDRNFD AHRKRPLANK NGEQERKKGV  120
PWTEDEHRRF LLGLLKHGKG DWRNISRNFV VSKTPTQVAS HAQKYFIRQQ LSGMKDKRRP  180
SIHDITTVNL TDFTPSDGSR PPSQDPNHAF LTQNAIGMQK MLIDWDKSKD GSIMVFDSTH  240
GNLLVSSPCE LASNGFILQK QNLYAGFHIN PHTLVFKRSQ IPGHRGYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1522871176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G125100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618056.10.0transcription factor DIVARICATA-like
RefseqXP_021618057.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H72e-95DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A251L0K20.0A0A251L0K2_MANES; Uncharacterized protein
STRINGcassava4.1_013179m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]