PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G106900.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 690aa MW: 79892.2 Da PI: 6.2806

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G106900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69	1.2e-21	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnH Manes.07G106900.2.p 68 DYYGNFARRNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKPSGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNH 156 59******************8888.***************************************99877789********** PP FAR1 88 ela 90 el Manes.07G106900.2.p 157 ELL 159 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-17	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.928	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-8	570	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-6	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MSSIPSKNIW MRRQQCPCGD WKCYITYEGD CEETSMASQL VKNDTFQSEA MVAPYVGMVF 60 KSDDDAFDYY GNFARRNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKPSGEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLSEKREN 240 DTLELLEACK ATKEMDEDFI YEYTVDENDK IENIAWSYGD CVRAYTLFGD VIYFDTSYRS 300 ITYGMLFGAW FGIESNGKTI FFGCVLLQEE TPRSFVWALQ AFIRLMKGKC PQTLVTDLDM 360 GLKDAICSEL PNTKHVISMW NILPKVYSWF SLAFGTRYAE FKSKFDELYR IESTEDFELQ 420 WSQMVSMFGL GSDKHIALLN SLRASWALSY VRGYFLARMA TSSYSKSVDA FLKGLCNAQT 480 CLRSFFEQVG VSANFLNHAC REMQYMLMKT CIPIEEQARS IFTPFAFNAL QHELMLAMQY 540 ALSEMADGSY LVHHFKKMDG EHLVIWIPED EQIHCSCKEF DSSGILCRHA LRVFIQKNYF 600 QLPEKYFLSR WRQESSPVLF DDHYARNKDG EWLQEYQSLT ETLFTESSIT KERTDFVHGE 660 LTKELTRLLR EVRDMPGSDG VALPLSPTG*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MSSIPSKNIW MRRQQCPCGD WKCYITYEGD CEETSMASQL VKNDTFQSEA MVAPYVGMVF  60
KSDDDAFDYY GNFARRNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKPSGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLSEKREN  240
DTLELLEACK ATKEMDEDFI YEYTVDENDK IENIAWSYGD CVRAYTLFGD VIYFDTSYRS  300
ITYGMLFGAW FGIESNGKTI FFGCVLLQEE TPRSFVWALQ AFIRLMKGKC PQTLVTDLDM  360
GLKDAICSEL PNTKHVISMW NILPKVYSWF SLAFGTRYAE FKSKFDELYR IESTEDFELQ  420
WSQMVSMFGL GSDKHIALLN SLRASWALSY VRGYFLARMA TSSYSKSVDA FLKGLCNAQT  480
CLRSFFEQVG VSANFLNHAC REMQYMLMKT CIPIEEQARS IFTPFAFNAL QHELMLAMQY  540
ALSEMADGSY LVHHFKKMDG EHLVIWIPED EQIHCSCKEF DSSGILCRHA LRVFIQKNYF  600
QLPEKYFLSR WRQESSPVLF DDHYARNKDG EWLQEYQSLT ETLFTESSIT KERTDFVHGE  660
LTKELTRLLR EVRDMPGSDG VALPLSPTG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G106900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617316.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A251KIN9	0.0	A0A251KIN9_MANES; Uncharacterized protein
STRING	cassava4.1_022117m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Manes.07G106900.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]