PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G099600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 352aa    MW: 38318.8 Da    PI: 6.3947
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G099600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-18257290134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Manes.07G099600.1.p 257 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 290
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-761344IPR016679Transcription factor, GATA, plant
SMARTSM004016.3E-17251301IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15255314No hitNo description
Gene3DG3DSA:3.30.50.104.1E-15255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.96E-15256305No hitNo description
PfamPF003204.9E-16257290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MIGPANFMDE IDCGSFFDHI DDLLDFPTDD IEACLPAPDC TTTNNNNGNA NSFPSIWSTQ  60
SDSMPGSNSV FSNNSGSDFS AELSVPYEDI VQLEWLSSFV EDSFSGGSLT MNKEDSSSDN  120
KDSSPQQFQT SSPVSVLESS SSCSGEKLVP DIIASARHGR ARSKRPRPPT FTPRPTMQLI  180
SPSSSVTETP QPQTLAVSKV PSDSENYAES RLLIKMPKHV APEHKKKKKK IKFTVPLCPA  240
ETTTQNSPPQ QQTIRKCVHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFIPSLHSN SHKKVLEMRS KTGDSPAGNA TTMSNSPEFI PNNSNLAMDY I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G099600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619011.10.0GATA transcription factor 8-like
TrEMBLA0A2C9VK610.0A0A2C9VK61_MANES; GATA transcription factor
STRINGcassava4.1_010811m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.26e-42GATA family protein