PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G084600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 865aa MW: 98312.2 Da PI: 6.9731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G084600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.6e-15	66	139	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA+++GFs+ + + ++ k +g i++ +f Cs+e ++++ + C+a+l+++++++++w+vtk+ +eHnH++ Manes.07G084600.1.p 66 FYDAYARRMGFSTHVGQFNRAKPDGPIVTWDFACSREVLKRRNFE--------------CCNAMLRIERKNSDNWVVTKFIEEHNHSM 139 9**********************************99888654..............5************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-13	66	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-30	275	367	IPR018289	MULE transposase domain
Pfam	PF04434	2.0E-10	540	585	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.905	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.4E-7	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MDVEVVDVEG RKGDNHIMVN ADSNKSGKLN VTEDSSEVMV RNQDDDGGAL PHVGMEFESE 60 DVAKAFYDAY ARRMGFSTHV GQFNRAKPDG PIVTWDFACS REVLKRRNFE CCNAMLRIER 120 KNSDNWVVTK FIEEHNHSMT VPSKVHYLRP RRHFAGATKN ATETLDASAT SDVYVPIDGN 180 HASYEQNRVR NVSLVEPNHP VRNVVHAPMN YVSPPSRKRT LGRDAQNLLN YFQKMQAENP 240 GFYYAIQLDD DNRMTNVFWT DARSRMAYNH FGDTVVFDTM YRPNQYQVPF APFTGVNHHG 300 QMVLFGCALL LDESESSFTW LFRTWLSAMN NRPPVSLTTD QDRAIQMAVA QVLPETRHRI 360 CKWHILREGQ ERLSHIYLAH PSFYGELYSS INFSETIEDF ESSWGSLLDK YDLQKNEWLQ 420 AVYNARKQWA PVYFRGTFFA AISSNQGFSS FFDGYVNQQT TIPLFFKQYE RALEHSLEKE 480 IEADYDTICT TPVLKTPSPM EQLAANLYTK KVFAKFQEEL VETFVYTANN IEDDGVVSKY 540 RVAKYEQDDK AYIVILNISE MKASCSCQMF EYCGILCRHV LTVYTVTNVL TLPSHYILKR 600 WKRNANSWVG TEEQSPDLQA IESLTSRFNN LCVEAIKYAA EGTIAVETYN LAINALREGA 660 KKIAAMKKNV AKVTPPSSQG SGNSLEETNK KTPFSVPEMV PSVWHWQDAM PHRFNLNDVG 720 VPVTDLNQPS TAPVSIHRDG CPPDNTVVLT YFKSMTWVIE NKTSTPAGKV AVINLKLQDY 780 GKNPSGETEV QFRLTRITLE PMLRSMAHIS QQLSTPANRV AVINLKLLSD PVFFFILFSL 840 PFAGIVISSH FGSKIPKQQQ GKQR*

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MDVEVVDVEG RKGDNHIMVN ADSNKSGKLN VTEDSSEVMV RNQDDDGGAL PHVGMEFESE  60
DVAKAFYDAY ARRMGFSTHV GQFNRAKPDG PIVTWDFACS REVLKRRNFE CCNAMLRIER  120
KNSDNWVVTK FIEEHNHSMT VPSKVHYLRP RRHFAGATKN ATETLDASAT SDVYVPIDGN  180
HASYEQNRVR NVSLVEPNHP VRNVVHAPMN YVSPPSRKRT LGRDAQNLLN YFQKMQAENP  240
GFYYAIQLDD DNRMTNVFWT DARSRMAYNH FGDTVVFDTM YRPNQYQVPF APFTGVNHHG  300
QMVLFGCALL LDESESSFTW LFRTWLSAMN NRPPVSLTTD QDRAIQMAVA QVLPETRHRI  360
CKWHILREGQ ERLSHIYLAH PSFYGELYSS INFSETIEDF ESSWGSLLDK YDLQKNEWLQ  420
AVYNARKQWA PVYFRGTFFA AISSNQGFSS FFDGYVNQQT TIPLFFKQYE RALEHSLEKE  480
IEADYDTICT TPVLKTPSPM EQLAANLYTK KVFAKFQEEL VETFVYTANN IEDDGVVSKY  540
RVAKYEQDDK AYIVILNISE MKASCSCQMF EYCGILCRHV LTVYTVTNVL TLPSHYILKR  600
WKRNANSWVG TEEQSPDLQA IESLTSRFNN LCVEAIKYAA EGTIAVETYN LAINALREGA  660
KKIAAMKKNV AKVTPPSSQG SGNSLEETNK KTPFSVPEMV PSVWHWQDAM PHRFNLNDVG  720
VPVTDLNQPS TAPVSIHRDG CPPDNTVVLT YFKSMTWVIE NKTSTPAGKV AVINLKLQDY  780
GKNPSGETEV QFRLTRITLE PMLRSMAHIS QQLSTPANRV AVINLKLLSD PVFFFILFSL  840
PFAGIVISSH FGSKIPKQQQ GKQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G084600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618429.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2C9VL71	0.0	A0A2C9VL71_MANES; Uncharacterized protein
STRING	cassava4.1_001529m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Manes.07G084600.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]