PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G062000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 339aa    MW: 36633 Da    PI: 4.7304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G062000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102713111055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Manes.07G062000.1.p 271 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 311
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14262326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-12266320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-12270315No hitNo description
PfamPF000101.3E-7271311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEPIGVALEG EWSSLSGMYT SEEADFLEQL LGNNDSSSSL GVLSSFWSSQ KSEMNMAGGN  60
GGLVDTNFYN FSQGSSSYSG GSSSQSYYFS DSHPVSIAMD FCVGDVTNTA SYLVEGDDCS  120
NREMRNGNVE ESGGNQQPAA ADLPVNCLLP KKEHEMLAPE TSTEDKSNSP SEISKKRSRR  180
AGDVQKNKRN VRSKKSKNFV SSNSNDEETN AGFNGPASSS YCSEDDSNAS HEQNGGASSS  240
LSSKGTSILN SNGRTRASRG AATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML  300
EEAVHYVKFL QLQIKLLSSD DLWMYAPIAY NGMDIGLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G062000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617911.10.0transcription factor bHLH85-like
SwissprotQ84WK02e-74BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A2C9VJ330.0A0A2C9VJ33_MANES; Uncharacterized protein
STRINGcassava4.1_025829m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-46ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]