PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G061700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 250aa    MW: 26587.4 Da    PI: 8.1328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G061700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002879101123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k F++   L  H  +H
  Manes.07G061700.1.p  79 YKCTVCNKAFPSYQALGGHKASH 101
                          9***********99999998887 PP
2zf-C2H2130.0003133155123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+++F++   L  H r+H
  Manes.07G061700.1.p 133 HECSICHRTFPTGQALGGHKRRH 155
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.28479106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-879101No hitNo description
SMARTSM003550.006279101IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-1379103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-8128155No hitNo description
PfamPF139126.3E-13132157IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203133155IPR007087Zinc finger, C2H2
SMARTSM003550.059133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MALEALNSPT TATPFSYEDT WTKRKRSKRP RSESPPTEDE YLALCLIMLA RGGAGGCTTK  60
EAEFSSPPPP QPPALTLSYK CTVCNKAFPS YQALGGHKAS HKKSSSETPT ANDNPSSSNI  120
SSTTTNTASG RTHECSICHR TFPTGQALGG HKRRHYEGPI GGGNNNSSSA ITSSEGGASQ  180
SQSQSQSRGG GGGFEFDLNL PAVPESNDLS INQRAFREQE VESPLPGKKP RLSLLLKQEE  240
TEMIVSLQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G061700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617583.10.0zinc finger protein ZAT10-like
TrEMBLA0A2C9VIZ30.0A0A2C9VIZ3_MANES; Uncharacterized protein
STRINGcassava4.1_014707m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-28zinc-finger protein 2