PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G041200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 365aa    MW: 40162.5 Da    PI: 4.4576
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G041200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15209245135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Manes.07G041200.1.p 209 CQHCGISEkdTPAMRRGPAGPRTLCNACGLMWANKGT 245
                          *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.1E-668103IPR010399Tify domain
PROSITE profilePS5132012.91468103IPR010399Tify domain
PfamPF062001.8E-971102IPR010399Tify domain
PROSITE profilePS5101712.759139181IPR010402CCT domain
PfamPF062036.2E-15139180IPR010402CCT domain
SMARTSM004011.3E-11203256IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.866203251IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12205257No hitNo description
Gene3DG3DSA:3.30.50.107.0E-15207250IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-14208252No hitNo description
PfamPF003201.9E-13209245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MERLNAIPLR EPPCGGEEDD RRLLHIDGGE LDGGLDGGEE EEGVMNGVEE VPQMSSMDFK  60
SSNGCMAQSA RTSELTIAFE GEVYVFPAVT PQKVQAVLLL LGGTDTPASV PSSEFLLQQN  120
AGVYNNVGDA SRGSKLSRRI ASLVRFREKR KERCFEKKIR YTCRKEVAQR MHRKNGQFAS  180
LKDCYSTDAG SNWEPNSGTP HSESASRRCQ HCGISEKDTP AMRRGPAGPR TLCNACGLMW  240
ANKGTLRDLT KGGRHISFDQ NELGTPDLKP STMKQENPYA NQDEEGSPEE SKPVPLDSEN  300
SLRPNDQELL EADETLTDPL PMRVENSPVN LDDEDFQDTL DELGNVSSSE FEIPGNFDDQ  360
VVVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G041200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618597.10.0GATA transcription factor 19-like isoform X1
TrEMBLA0A2C9VIG70.0A0A2C9VIG7_MANES; Uncharacterized protein
STRINGcassava4.1_010245m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-53ZIM-like 1