PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G038600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26103.8 Da PI: 7.511 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.8e-27 | 18 | 68 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCd+e+a+++fs tgkl+ey+s Manes.07G038600.1.p 18 KKIDNNTARQVTFSKRRRGLFKKAYELSTLCDVEIALMVFSATGKLFEYAS 68 68***********************************************86 PP | |||||||
2 | K-box | 52.3 | 2.4e-18 | 95 | 180 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + ++a L keie+ r++R++ Ge+L+ L+++eLqqLe+ Le+slk++ ++K e+l ++i+ l+ +l+een++L+k+++ Manes.07G038600.1.p 95 LQLKNGNIAALSKEIEERIRQLRQMRGEELHGLNIEELQQLENLLERSLKRVSETKGEILANEINALKSEGAQLKEENERLKKQMM 180 5555667899999999999999*************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-39 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.576 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-30 | 11 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.55E-39 | 12 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-27 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.514 | 95 | 185 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.2E-15 | 100 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSFDCLSLEM TRQKIQIKKI DNNTARQVTF SKRRRGLFKK AYELSTLCDV EIALMVFSAT 60 GKLFEYASSS MNQVIERRNL HPKNVGKLDQ TSLELQLKNG NIAALSKEIE ERIRQLRQMR 120 GEELHGLNIE ELQQLENLLE RSLKRVSETK GEILANEINA LKSEGAQLKE ENERLKKQMM 180 KERGGTMHLF EAGGQSSDSM ITNTSSSVDP AQDFEDSYTL LRLGLPFSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 10 | 75 | 1 | 66 | MEF2C |
5f28_B | 2e-21 | 10 | 75 | 1 | 66 | MEF2C |
5f28_C | 2e-21 | 10 | 75 | 1 | 66 | MEF2C |
5f28_D | 2e-21 | 10 | 75 | 1 | 66 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G038600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY486565 | 8e-74 | AY486565.1 Hevea brasiliensis clone mHbCIRa268 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617396.1 | 1e-166 | MADS-box protein JOINTLESS-like isoform X1 | ||||
Swissprot | Q9FUY6 | 6e-79 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2C9VIA0 | 1e-165 | A0A2C9VIA0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015454m | 1e-166 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 9e-61 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G038600.1.p |
Publications ? help Back to Top | |||
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