PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G006200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 748aa    MW: 80835.4 Da    PI: 6.5519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G006200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07322342526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Manes.07G006200.1.p 322 PCPDFRK-GACRRGDMCEYAHG 342
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.22E-1623161No hitNo description
SuperFamilySSF484035.29E-1933162IPR020683Ankyrin repeat-containing domain
SMARTSM002481703666IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-1836163IPR020683Ankyrin repeat-containing domain
PfamPF127965.2E-1145150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003283113IPR002110Ankyrin repeat
PROSITE profilePS5029716.49483153IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.3E-58499IPR002110Ankyrin repeat
SMARTSM002488.8E-5118150IPR002110Ankyrin repeat
PROSITE profilePS5008811.995118153IPR002110Ankyrin repeat
PRINTSPR014154.3E-5137151IPR002110Ankyrin repeat
SMARTSM003564.0E-6317343IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5322342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582322344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4322344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4350380IPR000571Zinc finger, CCCH-type
SMARTSM0035621352375IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.033352376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MCGGPDRSAK SSSPSPSTVE TSNAKDMNNL TVETVDSFSS LLDLAANNDV EGFKRLIQHD  60
ATSINEVGYW YGRQKGSKNI VLDHRTPLMV AATYGSVDVL KFIVAHTDAD VNLSCGMDKT  120
TALHCAASGG SLNAVDVVKL LLSAGADPNC LDGSNYRPID VIVVPPKLQS QRAALEELLS  180
NCVSNGSLGE HNSNGSLGEL SSNGSVGDRP CLQVSISYSP TLSSSPENGS PPSPSVLASS  240
PMASKYNDMP ISTSEKKEYP IDPSLPDIKN SIYATDEFRM YSFKVRPCSR AYSHDWTECP  300
FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD  360
GTSCNRRVCF FAHTPEELRP LYVSTGSAVP SPRSSASAAS VMDMAAALSL LPGSPSSVSA  420
MSPTPFNQSM SPTATSISHS SVAWPQPNVP TLHLPGSNFQ SSRLRSSLSA RDIPPEDLNL  480
LSDFDAQQLI LNDLPCFSQS RNNSASLNRS GWSKALAPSN LEELFSAEIS SPRYADQAAA  540
VFSPTHKSAV RNQFQQQQSM LSPINTTAVF SPKNVEHPLL HASFGVGSPG RMSPRSVEPL  600
SPMGSRLAAF AQREKQQQHQ LRSLSSRDLG SNNPAASVAG SPVNSWTKWG SPNGKLDWSV  660
NGGDELGRLR RTSSFELGNN VEEPDLSWVQ SLVKESPPEM LKEKYGMPVS GAALTGEGLK  720
PNSEIDSVLE SWLEQMQLDQ QQQLVVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G006200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617793.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2C9VHB20.0A0A2C9VHB2_MANES; Uncharacterized protein
STRINGcassava4.1_002305m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-163CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]