PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G175200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 323aa    MW: 36257.4 Da    PI: 7.8765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G175200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-161663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++ Ed++lv  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Manes.06G175200.1.p 16 KGPWSPAEDLRLVTFIQKHGHDNWRALPKQAGLLRCGKSCRLRWINYL 63
                         79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1669112146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w++
  Manes.06G175200.1.p  69 RGNFTKEEEDAIIKLHQALGNK-WSKIASHLP-GRTDNEIKNVWNT 112
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-23766IPR009057Homeodomain-like
PROSITE profilePS5129413.8231163IPR017930Myb domain
SuperFamilySSF466892.17E-3014110IPR009057Homeodomain-like
SMARTSM007171.1E-121565IPR001005SANT/Myb domain
PfamPF002496.8E-151663IPR001005SANT/Myb domain
CDDcd001672.80E-91863No hitNo description
PROSITE profilePS5129424.75664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2667118IPR009057Homeodomain-like
SMARTSM007175.9E-1568116IPR001005SANT/Myb domain
PfamPF002493.1E-1569112IPR001005SANT/Myb domain
CDDcd001672.77E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGKGRAPCCD KTQVKKGPWS PAEDLRLVTF IQKHGHDNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEDAI IKLHQALGNK WSKIASHLPG RTDNEIKNVW NTRFKKRLAF  120
KISDSKGNES KESSSISSSS CSSTTIMSGG KRNMATGLDQ QWSHGSVTKR TRLQDLHMEA  180
TLDEFRPTNK EANEMPSPSS SSSYNSNVTN RSQVDVSVAD DQMGSLFNFS APHPRSMIED  240
VSFESDLEFW NMLDGLNAAN EGVHLHNVET SQSSSLGVEC NGEVENRKWL RYLENELGLE  300
STRDGNQQNL SAVPETYQYE MP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-26161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-26161184105C-Myb DNA-Binding Domain
1msf_C4e-26161184105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G175200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346715e-45KM034671.1 Jatropha curcas clone JcMYB051 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615546.10.0transcription factor MYB63-like isoform X1
TrEMBLA0A2C9VT990.0A0A2C9VT99_MANES; Uncharacterized protein
STRINGcassava4.1_011897m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.11e-73myb domain protein 72