PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G167700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 421aa    MW: 46410.5 Da    PI: 8.0973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G167700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12350395655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Manes.06G167700.1.p 350 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 395
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16347405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-13348399No hitNo description
Gene3DG3DSA:4.10.280.104.1E-15349408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9350395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MESDLPHHHH FFHDHHQKQM NPGLTRYQSA PSSYLCGFLD REFCEEFLNR PTSPETERIF  60
ARFLASSGGN TENVSNQNFG LIKQDSPVRE AMPQVNQQAQ ILASVNSNDT TRLHQQQQQQ  120
TNYSVASQGF YQNSSKPPLP DKNSGCGMDY RMATSMGMER LPQMKSTTGG SNSNLVRHSS  180
SPAGLFSNIN VDVENGYAVL RGMGEHGAGN RETSYSTASR PPPAPGRMSP VAEIGNKNMG  240
KSSTENSGFG EARSKNYVTS FPTASWDDTS AMSAGAGVKT LTEDDRTLSG LNASETQSGD  300
AGNHPPMLAH HLSLPKTSAE LSAIEKFLQL QDSVPCKIRA KRGCATHPRS IAERVRRTRI  360
SERMRKLQDL VPNMDKQTNT ADMLDLAVDY IKDLQRQVKT LSEIRDNCTC TNKQQQQQQP  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G167700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615797.10.0transcription factor bHLH122-like
TrEMBLA0A2C9VRN40.0A0A2C9VRN4_MANES; Uncharacterized protein
STRINGcassava4.1_008877m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-78bHLH family protein