PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G156400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 373aa    MW: 41907.6 Da    PI: 4.4142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G156400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19123172255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Manes.06G156400.1.p 123 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 172
                          89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29122179IPR001471AP2/ERF domain
PROSITE profilePS5103223.657123180IPR001471AP2/ERF domain
SMARTSM003801.8E-38123186IPR001471AP2/ERF domain
PfamPF008471.0E-12123172IPR001471AP2/ERF domain
CDDcd000183.87E-33123179No hitNo description
SuperFamilySSF541712.22E-21123179IPR016177DNA-binding domain
PRINTSPR003674.2E-10124135IPR001471AP2/ERF domain
PRINTSPR003674.2E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMDQSILCPM KYTEHRKVTK KFIKPSLKPK KVADERSRLE HNNPPRVVRI SVTDPDATDS  60
SSDEEGELFR SQRVKRYVNE ICIEACSRDT LAVSNGRKRP ASVLPASSHR PIKLNTASTN  120
GRKFRGVRQR PWGKWAAEIR DPARRVRLWL GTYDTAEEAA MVYDNAAIKL RGPDALTNFI  180
TPPSREEQQE EAEAEAEAEQ VEEKPEINVT STSGYESGDE SHNLSSPKSV LNFRAQYCSD  240
ESELKKPVES VEKPKIESKP VEEVMLQECE GETNVSDESA EYLLPLDLPF LEEPFLNDFF  300
NFSSTGPSLF DDTITTTTST VLQESLSSED FSDMFLETPQ DFGTSLSSSM CQEDDFFQDI  360
GDLFFSEPLA AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21121179362ATERF1
3gcc_A2e-21121179362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G156400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614849.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2C9VRC10.0A0A2C9VRC1_MANES; Uncharacterized protein
STRINGcassava4.1_011246m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-60cytokinin response factor 4