PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G149800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 708aa    MW: 78634.9 Da    PI: 8.4863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G149800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157798223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         kC++C++ F ++ n++rHir+H
  Manes.06G149800.1.p 77 KCEKCSREFCSSINYRRHIRVH 98
                         7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.42976103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MPVAKLKSSN NTDVMKTEKG NDSLDTFIRQ AIGKEPFLSF SKAGDSPVQW IQLLQALDQQ  60
DLPGWPLLTP LKVQMQKCEK CSREFCSSIN YRRHIRVHHR LKKLDKDSSK NRDLLGTFWD  120
KLSEDEAMEI LSFKDVTLEG VPGSSIVKAL MGLIRKPGFS SLPQYCLRAG SALLDIIQAR  180
PSRFPLSSED LFSILDDASE KTFLCGTAVS MQKYIFDGEA GKIGLEMKNL VACTSFLVEQ  240
KLVKAWLADK DAESLRCQKL LVEEEEAAQR RQAELLERKR QKKLRQKEQK TKEHVQEEQA  300
NLLKERIDNT VEGVSSAEQS FPLTASDSGM SCLEALADHI PSSFESFELP SMVENVGLEI  360
QIGSGSDPGT RHNVERQTVQ RNSRRHFVVG RWHLSPKSQW NHVPNGFHAS QNSQASKHSA  420
MQKHGNHRDS KPVPSINGNR KWSRKSKPNY TEDGLKTRVQ KEAISLPDHN ERHEVLIGSI  480
SVALGNCSQQ EGNNVDGARD DFLSEHQIPK ENSVQDKHNR PDSAHCNTNR STIKLWRPVS  540
RNGMQGPISV DNGARESHVD GVAGKIDDYT PSNGNCLTSL SVGDNKCGTG SFPLLPESLH  600
PGTVHFSCQA AKAFLAERWK EAIASEHVKL VLSPELKSSA DIQNGCLVDV AQSSDMKKCS  660
LHGNVENQLV DVGSHESSTT GASKAKFRIK PEKGVKLKYI PKQRTIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G149800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616174.10.0uncharacterized protein LOC110617585
RefseqXP_021616175.10.0uncharacterized protein LOC110617585
TrEMBLA0A2C9VQZ50.0A0A2C9VQZ5_MANES; Uncharacterized protein
STRINGcassava4.1_004780m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-141C2H2-like zinc finger protein