PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G146700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 303aa    MW: 33997.4 Da    PI: 7.0548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G146700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-183481148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +lv++++++G g+W++ ++  g+ R++k+c++rw +yl
  Manes.06G146700.1.p 34 KGAWSPEEDRILVQYIQKHGHGSWRSLPKNAGLLRCGKSCRLRWTNYL 81
                         79******************************99************97 PP
2Myb_DNA-binding53.55.5e-1787132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE+  +++++ +lG++ W++Ia+ ++ gRt++++k++w+++l
  Manes.06G146700.1.p  87 RGPFTPEEEATIIQLHGMLGNK-WASIASQLP-GRTDNEIKNFWNTHL 132
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-242583IPR009057Homeodomain-like
PROSITE profilePS5129417.6792981IPR017930Myb domain
SuperFamilySSF466894.77E-3131128IPR009057Homeodomain-like
SMARTSM007171.5E-143383IPR001005SANT/Myb domain
PfamPF002491.5E-163481IPR001005SANT/Myb domain
CDDcd001672.83E-113681No hitNo description
PROSITE profilePS5129427.14882136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2784136IPR009057Homeodomain-like
SMARTSM007171.8E-1686134IPR001005SANT/Myb domain
PfamPF002493.8E-1687132IPR001005SANT/Myb domain
CDDcd001674.24E-1189132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTSLEKKTRA PREEEVKKKK MGRTPCCDKD GVKKGAWSPE EDRILVQYIQ KHGHGSWRSL  60
PKNAGLLRCG KSCRLRWTNY LRPDIKRGPF TPEEEATIIQ LHGMLGNKWA SIASQLPGRT  120
DNEIKNFWNT HLKKRLSSLD QKLQISCSSS EPNAKCDSPS TRHMVQWESA RVEAEARLSM  180
ESLLLNPSSS VKMEYDYFLQ LWNCEVGESF RNINGKVGEA CESPISQASS STKFGSGDNE  240
NAAQMMSIKQ ETVHEQEDNC KPNADVITGS DSISSNEFID YSDTVLKMLL DVPVGNGMEF  300
LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-263213625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G146700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347208e-53KM034720.1 Jatropha curcas clone JcMYB100 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021671666.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-100MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2C9VSZ30.0A0A2C9VSZ3_MANES; Uncharacterized protein
STRINGcassava4.1_026502m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-102myb domain protein 17