PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G142500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 429aa    MW: 46551.6 Da    PI: 7.7597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G142500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.1e-09105126426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C+f+ + G C++Gd+C+F H+
  Manes.06G142500.1.p 105 KVCNFWVQ-GKCSFGDKCRFLHS 126
                          68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.392450IPR000571Zinc finger, CCCH-type
SMARTSM003560.352449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7102126IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-7105124IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6105126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.0E-16125237IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.6E-5132171IPR001680WD40 repeat
SuperFamilySSF509784.39E-48132420IPR017986WD40-repeat-containing domain
PfamPF004004.9E-4135171IPR001680WD40 repeat
PROSITE profilePS5029420.461139341IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.349139180IPR001680WD40 repeat
PROSITE patternPS006780158172IPR019775WD40 repeat, conserved site
PRINTSPR003205.4E-6158172IPR020472G-protein beta WD-40 repeat
SMARTSM0032017211248IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.8E-32238419IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.9E-4255292IPR001680WD40 repeat
PfamPF004000.0026259292IPR001680WD40 repeat
PROSITE profilePS5008212.614262301IPR001680WD40 repeat
PROSITE patternPS006780279293IPR019775WD40 repeat, conserved site
PRINTSPR003205.4E-6279293IPR020472G-protein beta WD-40 repeat
SMARTSM003202.5E-4295332IPR001680WD40 repeat
PfamPF004000.0025297331IPR001680WD40 repeat
PRINTSPR003205.4E-6319333IPR020472G-protein beta WD-40 repeat
SMARTSM0032019336379IPR001680WD40 repeat
SMARTSM003205.6382419IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDLDAQGGNS RVFQRLGAQP ANDTRQQKVC HHWRAGRCSR HPCPYLHREL PPPAPAGSNG  60
NASKRGFSND SGFSGPSGTR RSGNFSNSSS WGRVVNNKVS RKAEKVCNFW VQGKCSFGDK  120
CRFLHSWSLG ESFSLLTQLD GHKKVVTGIA LPSGSDKLYT GSNDETVMVW DCQSGQCMGV  180
IQLGGEVGCM INEGPWIFVG VPNVVKAWNT QTNTDLSLNG PVGQVYALVV GNDLLFAGTQ  240
DGQILAWRFN AVTFNFEPAA SLTGHTVAVV SLVVGANRLY SGSMDHSIRV WNLETLQCVQ  300
TLKEHSSVVM SVLCWDQFLL SCSLDQTIKV WAATESGNLE VTYTHKEEHG LLTLCGMHDL  360
EGKPVLLCSC NDNSVRLFDL PSFSERGKIY AKQEIRAIQT GPGGLFFTGD GTGQVRVWKC  420
VAEPTAVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201274204323Tako8
6g6n_A1e-201274204323Tako8
6g6n_B1e-201274204323Tako8
6g6n_C1e-201274204323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G142500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615892.10.0zinc finger CCCH domain-containing protein 48 isoform X2
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A251KR250.0A0A251KR25_MANES; Uncharacterized protein
STRINGcassava4.1_021841m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein