PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G140500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26509.3 Da PI: 10.3173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.4e-13 | 66 | 118 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ + ++ Lr+llP ++K s ++ +Av+YI++Lq Manes.06G140500.1.p 66 KKKLHRDIERQRRQEMATLYASLRSLLPLqY---IKGKRSISDHMNEAVNYINHLQ 118 6889*************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-14 | 62 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.71E-11 | 63 | 122 | No hit | No description |
PROSITE profile | PS50888 | 13.808 | 65 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-10 | 66 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0014 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MFPLHQGNEL CFQISSNHPH KIPQDLILSN PALYGSDITD DLGKSRRRKS ISKDNDGTAE 60 NNDNDKKKLH RDIERQRRQE MATLYASLRS LLPLQYIKGK RSISDHMNEA VNYINHLQKR 120 IKKLGVKRDA LKQQTNLREI PQRSGSSNKT SPGTRVIIRP RLGGIEIVFS SGFGEQGFTL 180 SRVLQLLLEV ELSVVNCVST KVNERVLHTV QAEVKDPTCL NLSELQQKLN PLVP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 49 | SRRRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G140500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616905.1 | 1e-172 | transcription factor bHLH126-like | ||||
TrEMBL | A0A2C9VQV4 | 1e-170 | A0A2C9VQV4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015229m | 1e-171 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 3e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G140500.1.p |