PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G114100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 1778aa MW: 201317 Da PI: 8.3965 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 1658 | 1683 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L +H r+ + Manes.06G114100.1.p 1658 YQCDieGCTMSFGSKQELAVHKRNiC 1683 99********************9877 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 1683 | 1705 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk+F ++ +L++H r+H Manes.06G114100.1.p 1683 CPvkGCGKTFFSHKYLVQHRRVH 1705 9999*****************99 PP | |||||||
3 | zf-C2H2 | 12.2 | 0.00056 | 1741 | 1767 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H Manes.06G114100.1.p 1741 YVCGeeGCGQTFRFVSDFSRHKRKtgH 1767 99********************99666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 8.3E-14 | 26 | 67 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 14.492 | 27 | 68 | IPR003349 | JmjN domain |
Pfam | PF02375 | 2.5E-14 | 28 | 61 | IPR003349 | JmjN domain |
PROSITE profile | PS51184 | 32.983 | 194 | 363 | IPR003347 | JmjC domain |
SMART | SM00558 | 9.6E-51 | 194 | 363 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 3.02E-26 | 208 | 379 | No hit | No description |
Pfam | PF02373 | 1.4E-36 | 227 | 346 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 1650 | 1680 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.9 | 1658 | 1680 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0024 | 1681 | 1705 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.57 | 1681 | 1710 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 1682 | 1709 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1683 | 1705 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.97E-9 | 1697 | 1739 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-8 | 1710 | 1735 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.741 | 1711 | 1740 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 1711 | 1735 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1713 | 1735 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.97E-8 | 1729 | 1763 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.9E-9 | 1736 | 1764 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.76 | 1741 | 1767 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 1741 | 1772 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1743 | 1767 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0040010 | Biological Process | positive regulation of growth rate | ||||
GO:0045815 | Biological Process | positive regulation of gene expression, epigenetic | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0071558 | Molecular Function | histone demethylase activity (H3-K27 specific) |
Sequence ? help Back to Top |
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Protein Sequence Length: 1778 aa Download sequence Send to blast |
MAASGGLVSE PTSQQEVFQW LKNLPLAPEY HPTPAEFQDP IAYIFKIEKE AAKYGICKIV 60 PPVLAAPKKA AIANLNRSLA ARAGSSASKS PPTFTTRQQQ IGFCPRKPRP VQKPVWQSGE 120 NYTFQEFETK AKSFERSYLK KCSKKGALSA LEIETLYWKA TVDKPFSVEY ANDMPGSAFS 180 PIKTGGKEMG EGVTVGETEW NMRGVSRAKG SLLRFMKEEI PGVTSPMVYV AMMFSWFAWH 240 VEDHDLHSLN YLHMGAGKTW YGVPREAAVA FEEVVRVHGY GEEINPLVTF AILGEKTTVM 300 SPEVFVSAGV PCCRLVQNAG EFVVTFPRAY HSGFSHGFNC GEAANIATPE WLRVAKDAAI 360 RRASINYPPM VSHFQLLYDL ALELCTRVPV SITAKPRSSR LKDKQKVEGE TLVKELFIKN 420 VILNNGLLHI LGKGSSIVLL PRSSSDISVC SNLRVGSQLR VSPSLGLCSD SVILKSSEDS 480 IADEIMPERN NRINQVKGLL SVKEKFASLC ERNRLSSLNR NDSMHTMVTG NEKGATVHGD 540 KLSDQRLFSC VTCGILSFDC IAVVQPTEAA ARYLMSADCS FFNDWIVGSG ITNDGFPIAG 600 GETNASEQNS SIKWIEKNTV DGLYDVPVQS ANYQIQVIDQ NKVASNTETQ RGTSSLSLLA 660 LNYGNSSDSE EDQVEPDVLH HDDEINLANR SSENKYQHQI SALPSFKQEC HHDETDDHNL 720 SSSRPDCGDE VTVQTNGWHA KHGHGNRPAN FKDENDRALN CSVEFETDNL ASVEPKGLEH 780 TFRGPMSTSH MTGKAKFNRV GVPREHLGAS FAQRSDEDSS RMHVFCLEHA VEVEQQLRPI 840 GGVHILLLCH PEYPKIEAEA RSVTEELGIE YLWNDITFRD ATKEDEENIQ SALDSEEAIP 900 GNGDWAVKLG INLFYSANLS RSSLYSKQMP YNSVIYNAYG RISPASSPTK YNVYERKPSK 960 QKKVVAGRWC GKVWMSNQVH PFLTKRDSEE QDQEQEQDRN LCAWTRPDEK LERKSESTCR 1020 TETTSATRKS GRKRKITVAS GPGKKVKCLD TEDAASEDSQ EDVSHKQHTR VYSRKQIKRV 1080 EREISYDLLE DDSHQRCGRT HRSKQAKSVE KEDATSDDSL RWNTHQQHRR ILRSKQDKSF 1140 ESENDVSYAL VDNTSQKKHG RIPKTGRKQA KYVERKEFSD DSLEGDIRDW HGRVSRGTQD 1200 KFRREDAFSD DSLEESSHRP LRRVHIRKRG TYFEKEEAIS DDSLDNSSLQ QKRISGGSQA 1260 KFRDDEVSDD MLEGSTYQQQ TGSYRSRESK FLDGEGAVSD DLLEDNTCQQ HRRIFRTKQA 1320 KFVERENATS DDSLEDTIRQ QRRVIPRSKR SKFIEREDAI SDDLLEDDTN LKHRTIPRSR 1380 KAKFAEREDF SVDLQEDDGQ WQQRKAPRGK QTKFIESEDV SDDLQEEDAH WQLRKTSRCK 1440 QAASTESGDV SDDLDDEGNT RWQPKKTPRM KQAKFIERED VSDDLHEDDS GWQPRKIPRG 1500 KQAKLIERED AVSDDLLEDN SNKQHRRNLR SKQRKPVTLR KMKRGAVQRV KQGTARLKKN 1560 ESLQSIKQGK QTKQETPRFS NAKFEHNARQ QLESGAEEEL EGGPSTRLRK RPSKPSKESE 1620 TKLKEKLQNN RKKVKSGSAG KPPNGQKNVK HKDEEAEYQC DIEGCTMSFG SKQELAVHKR 1680 NICPVKGCGK TFFSHKYLVQ HRRVHLDDRP LKCPWKGCKM TFKWAWARTE HIRVHTGARP 1740 YVCGEEGCGQ TFRFVSDFSR HKRKTGHSVK KSSKRLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 3e-79 | 13 | 384 | 1 | 353 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 3e-79 | 13 | 384 | 1 | 353 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1621 | 1632 | KLKEKLQNNRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me (PubMed:21642989, PubMed:27111035). Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay (PubMed:20711170). Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli (PubMed:18467490). Binds DNA via its four zinc fingers in a sequence-specific manner, 5'-CTCTGYTY-3', to promote the demethylation of H3K27me3 and the regulation of organ boundary formation (PubMed:27111034, PubMed:27111035). Involved in the regulation of flowering time by repressing FLOWERING LOCUS C (FLC) expression (PubMed:15377760). Interacts with the NF-Y complexe to regulate SOC1 (PubMed:25105952). Mediates the recruitment of BRM to its target loci (PubMed:27111034). {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:20711170, ECO:0000269|PubMed:21642989, ECO:0000269|PubMed:25105952, ECO:0000269|PubMed:27111034, ECO:0000269|PubMed:27111035}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G114100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614573.1 | 0.0 | lysine-specific demethylase REF6 | ||||
Swissprot | Q9STM3 | 0.0 | REF6_ARATH; Lysine-specific demethylase REF6 | ||||
TrEMBL | A0A2C9VPX7 | 0.0 | A0A2C9VPX7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_000108m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5648 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 0.0 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G114100.1.p |