PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G095600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 626aa    MW: 67399.9 Da    PI: 7.5755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G095600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30278337159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Manes.06G095600.1.p 278 MNDGCQWRKYGQKIAKGNPCPRAYYRCTITpSCPVRKQVQRCAEDVSILITTYEGTHNHP 337
                          58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-32263339IPR003657WRKY domain
SuperFamilySSF1182902.35E-27270339IPR003657WRKY domain
PROSITE profilePS5081128.483273339IPR003657WRKY domain
SMARTSM007744.6E-36278338IPR003657WRKY domain
PfamPF031061.7E-26279337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MEDVFRRSGH GALPKENKPD DYHSSAGYHH QHEAACKEEI LAKVGSKRAY HESSEDLKSL  60
AEHDKDLSLT NQVDVANDKK ERSTLESDSK ASSSSQKKQD NWLESTRAEM GEVREENQRL  120
RMYLGQLMKD YQALQIKFYN TIQQEKTKKS TSAVDTSHQV VEEDDLVSLS LGRFSSKSIK  180
DQKSKIYSNG KDDEPATNEG HLSLGLDCKF KVSISHNADG ELLANPTSPV NSSEDQQKEE  240
AGKMIKAMPS GGDDEMVQQN PLKKARVSVR TRCDTPTMND GCQWRKYGQK IAKGNPCPRA  300
YYRCTITPSC PVRKQVQRCA EDVSILITTY EGTHNHPLPL SATAMASATS AAASMLLSGS  360
ASSSSRTGPN PSAISSTTAA DLHGLNFCLS DNSMSKQFYL HNSSLSASPS HPTITLDLTS  420
NPSPSPSQFN RFSSSYAPIL KSAPAGLYFS SDIPNAAPWG NGLLSYGSAS QPYNRTLQGT  480
LNVSGRPPIE GSHFQPYMQK KTESSLQQPL PDTIAAATEV ITSDPSFQSA LAGALISIIG  540
SGSTNVGGVD NFAQKLKLGE HFPVASGCSS SPTTKASIAC ATSYLNKTTS ANSQPANLMF  600
LPPSLSFPST KSASASPADN RDTPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22268339777Probable WRKY transcription factor 4
2lex_A2e-22268339777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G095600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615237.10.0probable WRKY transcription factor 61
TrEMBLA0A2C9VRH80.0A0A2C9VRH8_MANES; Uncharacterized protein
STRINGcassava4.1_032698m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.19e-78WRKY DNA-binding protein 61