PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G090500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40385.7 Da PI: 7.8822 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 3.9e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL kkv + +++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk Manes.06G090500.1.p 16 LPPGFRFHPTDEELISHYLYKKVLDIDFSS-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDK 104 79*************************999.88***************888999************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle Manes.06G090500.1.p 105 EIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-64 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.999 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MENLSGLVKE DDQMDLPPGF RFHPTDEELI SHYLYKKVLD IDFSSRAIGD VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSGG KKTHISGLVR 180 LGSFGNELGP SGLPPLMDSS PFSGKTKPFA ESAYVPCFSN PIDVQRNQQQ SIDCLNNNLF 240 AVSSNPADIY PRIPLPNSFY SSQTVPFSAN LQYPGSVLMQ DHSILRALIE NQGSNLKQSF 300 KTEREMVSAS QETGLTTDMN TEISSVISNL EMGKRGFDDQ EAPSTSAGPV DLDCLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-56 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-56 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-56 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-56 | 8 | 172 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 8 | 172 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-56 | 8 | 172 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-56 | 8 | 172 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G090500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605155 | 0.0 | KR605155.1 Manihot esculenta NAC transcription factors 17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614789.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Refseq | XP_021614790.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-175 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0M3R852 | 0.0 | A0A0M3R852_MANES; NAC transcription factors 17 | ||||
STRING | cassava4.1_010528m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-177 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G090500.1.p |
Publications ? help Back to Top | |||
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