PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G087200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 543aa    MW: 59970 Da    PI: 7.5951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G087200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007298116321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          C+ Cgk+F ++  L  H++
  Manes.06G087200.1.p  98 CKECGKVFQSWKALFGHMK 116
                          ******************7 PP
2zf-C2H211.70.00083453475123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k+F++   L  H r+H
  Manes.06G087200.1.p 453 HECPICLKVFPSGQALGGHKRSH 475
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.95E-9931No hitNo description
PROSITE profilePS501579.723931IPR007087Zinc finger, C2H2
PfamPF139121.8E-5932IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-991118No hitNo description
PROSITE profilePS5015711.34496123IPR007087Zinc finger, C2H2
SMARTSM003550.02496118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139121.8E-798118IPR007087Zinc finger, C2H2
PfamPF139122.8E-12365390IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388366393IPR007087Zinc finger, C2H2
SMARTSM003550.06366388IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.96E-7366388No hitNo description
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-7448475No hitNo description
PfamPF139127.9E-13453475IPR007087Zinc finger, C2H2
SMARTSM003550.071453475IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995453475IPR007087Zinc finger, C2H2
PROSITE patternPS000280455475IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEEGQQFKHV CKFCSKSFSC GRSLGGHMRS HMINDISAQA DGSKLTKKKL PSLPSNNGAN  60
NNTNSTETAG YGLRENPKKT WRLADHSSED TSLLEKFCKE CGKVFQSWKA LFGHMKCHSL  120
EKEKFSNNNS LEEQQDSWTS GNNQKLVMDS QSDNEIAAPN RRKRSQRRIR YMGAANSSSL  180
SFANNASSSV SEIEQEQEEV AMCLMMLSRD VGQWGGLNSV AAESSDNNAA FLETNLVSSK  240
TEDKPSVCTG AETLKMKKLG EKLEMGKLED YDDLKVENRG FTKNKPKKCQ LDDECETENS  300
GVKLGKNLTK ETGLEQSEMV PSKCSSSKRK LRDSFDPELK SDYLKKLRTN ASDSEVCKNS  360
DRSSRFECTT CNKVFHSYQA LGGHRASHKK TKGCFASRID SSENSIETEL SPDSTTESKI  420
IKSIKNEISS DHLAIDCDSK AEISYGAKKS KGHECPICLK VFPSGQALGG HKRSHLVGAN  480
EAKNNQTITI QEAIPPIRDF LDLNLPAPVE EESNGLVGFN PWWIGSGHNH ESLVSLISNQ  540
VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G087200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615471.10.0zinc finger protein 84-like
TrEMBLA0A2C9VPA80.0A0A2C9VPA8_MANES; Uncharacterized protein
STRINGcassava4.1_031696m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-31C2H2-like zinc finger protein